RNA id: XM_026916889.2


Basic Information

Item Value
RNA id XM_026916889.2
length 2814
RNA type mRNA
GC content 0.46
exon number 3
gene id paqr4a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1220494 ~ 1237202 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAACCGACTGATATGGACGCCGGTGTAGAAGATGGCAGAAGAGAGATGTTCAGGGGATTTTAGGCGGATTGGAGGTCAAAATTTGTTTCGAGGATAATCACACAGAAAAGTCggatcctgtgtgtgtgtgtgttttttacgCCAAGTTCCATTTTTCGGAATAAAATCAAGCTAGCCGGGGAGTGTGTTATGGTTTTTGCCCAGCTCCAGTCCCTCTGCCTGGCGGCCCATAGCGGCGAACAGCACCGGGCATGACCGCTGGCTCTGAACTGTGACTTTCTGCCTGATTTTCTAATAGGAATATCGATTAAATCTCACGTTATGATTTCGCTAATCTGACCGAATCAGCTGGTTTGGGGTTAGCAAGTGCGGCtacatgttagctagctatgagtgtgtgtgtatgtatgcctgtatgtatgtatgtgtttgtgtgcgcgcgcgtgcgtgcgcGTGCACGTGTATGGGGACACCCTGCTTAACTGACTCTAGATGTGATTgaatggagatttttttttattataaattgtgttctttgttgtttttatttttggtattttcacACCATTTACTATACCACATACTGAATACAAAAGAATTACAACGACTTTATTAAGCTGTAATGTTTATGAGAGAGCGTTAATCTATAACTAATCTTATTCGGTTTACATTGAAAACGTGAAAGAAAAAATCTAACAAATGAACACCAAGATTAAAATATGACATAAATCATATGCTTAAATACactaaatttaataaatgaccTAATTTCGACACGGTATAGTGTATAAATTGACTAAAATTGGTGAAATAAACTTTAACAGTTGGTTAATTACCGTGTTATAAACAGATAATTCATTTCTGTTCACCGAAATCCACTCCTCAGTCCTTAGAaccttttttatgattttattttagtcTCTAAAGacttaaaatgttatttttttaaaaggttttaagTGAATCTGAGGTCACGGTGAACTTATTGAACTTGAAACTTAGggttagcattagcatagcAGGTGGGGTGAATGTGAAGAAGTCAGTCAAAGCGGATGAAAATgagatttaattcatttttaaagtgttttatcaAACTTTCCAAGCAAGTGGCGATTttataagaaagaaaaggaaggaaaaaagattaGTCAATtcggctttttaaaaaaaaaaaatgatttaaaccgTCCTCTCGTTCCAacatgctaatgttgctaattaGCGTTTATGCAAATGACAGTTAGGCGCGAGCCGGTCAGGAGGCAGCGGTTAGCCCGCTAGCTAAGCTAGCAGAGTTAGCGCTCTGCTTTGTGGAGATGTCGGAAGATCGATGTGTTTGTGAGGTCGGatgtcagattttattttgtaggtgacattttgttgtttgtttttataaaaacaaatcaaacatttgAGATAATTGTGGCTGAAGTCAGGAAAAcggctccatttttttttttttttttaattcccctCAGCTCGCCATGGCAGCAGGCGCGCGCTCCACATCCCGATGCGCGCGCACCAGTCAGCAGTGTGTTTAATACAGACTGAGAGATTCTGCAGTGTATTGTGTTGCATGttgcatgttgtgtgtgtatgtgtgtgtatgtgtgtgtatgtgtgtgtatgtgtgtgtgtgggttttgttTGTGCAATGGCCTATCTAAATGGACCCAGATTACTGGACTGGGCGAACTCTCCTCCTCACCTCCAGTTCAATAGATACGTCCTGACCGGCTACAGACCCATCTCCTCCGTGCAGGACTGCATCAGGAGCCTGTTTTACCTGCACAATGAGCTGggaaacatctacacacacgGCATCCCTCTGCTGTGTTTCTTGGTGCTGCTCCCCCTCAACATGCCCTGGTCTCAGATCAGTGTGACGTGGCTGGGCGTGGTCCACTTCCTGGCCTGTTTGTCTCCTCAGCTCGGCTCCGTCCTCTATCACCTGTTCATGAACCACGAGGGCGGAGAACCCGTCTACAAAAAACTGCTCACCTTAGACATGTGCGGCATCTGCATGATTACCACTCTGGGCGCTCTGCCCATCGTCTACAGCACGCTGCTGTGCTACCCGTTGCTGCGCGGCGCCGCCCTGCTGGCCTACATCGCTCTGTCCAGTTACGCCATCCACTGCGCAGTGACGGCGCGGAGCAGCGTGCGCCGCTTGCGCTCGTTCGCCGGACAGGCGCTGTTTCGCTTCTTCTTCCTGGGGTTGCGGTGGGTGGGCGTGGGCGGGGGAAGCCCCACGTCGCTAAGACACTTCCTCACCATGGAGGCGCTGGCGGTGTTGGGCGGAGTCATCAACATCGCCCGCGTGCCCGAGCGCTTCTGCCCCGGTCTCTTTGACTACTGGTGCAACAGCCACCAGATCATGCACGTCCTGGTGGTCGGCTCCATCCTCTCGCTGCACTGGGGCGTCCTGGACGACCTGCTGTGGATCAACATCTACGACTGTCCGGCAGACTGACCTCTgattgacctctgacctctgggGCGGGGTTTTTTTTCAAGGAATCCTGTCCTGACTGGTCTCGAtgagatttcttttttctttttttttttctttgttttgttattagAATTTGACATGCATCAGGTTTTCTTTAGACTCAGGGAGGGGTCACAAgctctgacctttgacctcttgACTCTTGTTTGTATCCAGGGGGTTTGTGATTCATAGGATTCATTTGCAAACTTGGGATTCCTGTGTAGAgatctgacctttgacctcggGGTGCAGATTATTGTTCATCCTCGCAGTTCGACATGCATTAAGCACTGATAAGGGCGGGGATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240861 lncRNA upstream 109647 1110529 ~ 1110847 (+) True G203385
XR_004579335.1 lncRNA upstream 142068 1061190 ~ 1078426 (+) True LOC117598762
TU240787 lncRNA upstream 159973 1058679 ~ 1060521 (+) True G203327
TU240833 lncRNA upstream 336128 817391 ~ 884366 (+) True G203357
TU240820 lncRNA upstream 414149 805200 ~ 806345 (+) False setd1a
TU241190 lncRNA downstream 72195 1309397 ~ 1312989 (+) True G203635
TU241208 lncRNA downstream 125181 1362383 ~ 1441015 (+) True G203647
TU241222 lncRNA downstream 209787 1446989 ~ 1500793 (+) True G203660
TU241224 lncRNA downstream 285024 1522226 ~ 1533045 (+) True G203662
TU241234 lncRNA downstream 328154 1565356 ~ 1566629 (+) True G203672
XM_034309722.1 mRNA upstream 110356 1078439 ~ 1110138 (+) True LOC113528076
XM_034309725.1 mRNA upstream 110356 1078439 ~ 1110138 (+) False LOC113528076
XM_034309724.1 mRNA upstream 110356 1078439 ~ 1110138 (+) False LOC113528076
XM_034309723.1 mRNA upstream 110356 1078439 ~ 1110138 (+) False LOC113528076
XM_026916380.2 mRNA upstream 110356 1078439 ~ 1110138 (+) False LOC113528076
XM_026916593.2 mRNA downstream 16325 1253527 ~ 1266121 (+) True coro1a
XM_034310224.1 mRNA downstream 86898 1324100 ~ 1345037 (+) True ppp1caa
XM_034310288.1 mRNA downstream 116127 1353329 ~ 1361460 (+) True kmt5c
XM_034309989.1 mRNA downstream 164606 1401808 ~ 1494018 (+) True shank1
XM_026917182.2 mRNA downstream 267676 1504878 ~ 1531986 (+) True si:ch211-51c14.1
TU240783 other upstream 169355 1046805 ~ 1051139 (+) False armc5
TU240808 other upstream 462436 753275 ~ 758058 (+) False fus
TU240780 other upstream 487640 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240792 other upstream 510051 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 543655 672224 ~ 676839 (+) False thoc6
TU241205 other downstream 116132 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 324392 1561594 ~ 1591075 (+) False syt3
TU241504 other downstream 645873 1883075 ~ 1885478 (+) False ccndx
XR_004579364.1 other downstream 918397 2155599 ~ 2155849 (+) True LOC117598829
TU242114 other downstream 1766470 3003672 ~ 3012859 (+) False pyya

Expression Profile