RNA id: TU240956


Basic Information

Item Value
RNA id TU240956
length 4311
lncRNA type read_through
GC content 0.41
exon number 2
gene id G203458
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 720089 ~ 763924 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCACTTACTGCTGGAGCCACCGGGTCCGTGATCCCGAGGTCCTTCAGATCAAAACAGAAACCATTAGAACTGACAAACACGATAACcaaaatcatacacacacacacacacacacacacacacacacacacacactattaacactatttactaaaaatgaaacacacacacagagactctgTACCTAAACGATTTATACTGGAGGTCTGCTCAGAACCACGATGCTACGTGACGTCACATCACACGCAGGTTTAAAGGTTCTGCACACGCGACCACGTTTCATCCTCGAACCATTTTTACTCACTTCTGCTGAAAATGAGAAATCCTCTCAAACAAAAAcatctattttgtgttttgtctccTCAGGACCCGTGACTCATAAGCGTTTCCCGTCGGGTACCTTTACGTCTGACGTCACTGACGTTTCTCAACCAACCATCTGTCTCCGTTTACATCATGAACCTTCTGAACCTtctaccatccatccatccatccatccatccatccaattaaaaatttaacacttttattCCCCCCCCCAGATTTTAgccatcactttatcactttaaaAGTCCAAAAATTCATCCCATGTGTAGCTGTtctccagtcagtttgtaataaacactgaaaacaaaataaacattttatctaCGAGATCTCCGTGAAAAAACAGATCGTggcataatttatcacgatatcgatattacAGTCAAATCCTGAGACCTACAGACTCGCTATTCTCTATCATtaccattattttttaaaaaatattatattagtgttagtgttagtagtagtagtaatccTACAATCTCTGTACTGAACATGTTGaattcagttgcctgatcacGTGACAAATCACGTCCGGAAATGATTCAGATTTGGAAGGTTCATGCTCCATTTTCTTTATACACTTTTCATATAAACCCAGCACTTACATCACCACCGGCGTCAACCTGAGCATCTCTGCATGAGCGTGTCCTTCCACAGGACATTTTCCGCTCATGAGAAGGTGATGTGCGTCAGTCACTGGACGTCTCCGGGACACCGTCCTCATCGCCAGAGCATTTTTTAACCGCGTTTAACCGTCGCATGTCGTTTCTTTCACCACCAGAAATAAGCTTCAGCCTCCATCCTGGTACCAGGAACATGAACACAGCCTGGGAGGCAGGACCCAGTTTCACGCTACACACCCAGAATCCTCACTGTCACTGCCTCATCAATAACCACGATGCGATGGAGTAAAATACCACAGAGATCGTGACTGTGCAGACTCAAGACTCACATCATACCAGAAACACTCACGGTTAAATAGAGTACTGGAGATGGAATGGAAACCTGGTTTTCTTGCAGTGTAGCAGCTCTCACAGAGCAACGCTGGAGTAACACTCTGCTTAAACTAGCTCTTCTTTCAtgctcacaccacacacacacacacacacacatgtggatTCTGATGATTCAAGAATCATTGTTTCTTCTCAAAGCGTAAACAGGGTTCACCATACTGTacatccaaaacaaacaaacccatcttaaaaaataaaaaataaaaaccctctTAACACAGATCTAATTCAGTTGTGGAATCTACATcgacaaaaaacacacacaggtggaaTACATGAGTTCGTTTTCTTCACGCTGTTAATGAATCCAACTCCAAATATCCACTTCCTTAAAATCCTTCTCCGTTCCAGACCAACGCGAAATGAAACGAAATCAGAACATTTCGAAACTTCTCACTGATGGAATGAGGTTAAATGTTCTGGACGCTTTCTCATACGCAGTGAGTTTGGAcggaaccctggtgtgttctcctcctcggtgcggttctttaggcaggtgagaacacactcGGTCCATCACGCTCGggtccgagagagagagagacgtctCGGTCCGCTTCTGAATGAACTCTAGTGAGGAAGcgatttgactctgaatcgactcactgcaggaagtgaatcagacacgctgtgtgtttattttttttttttaaaactgagccaaaggacagagctgtagtagcgccatgtgttctggagatttgcgAAAAATAAACTCGGCACACGCAAACGTTATAAACTAGtgatttatataattatgtaattgtttatttagcaCCGTCTTcgtgttctctgtgctcaggtgtgtttttttttttgcttttaattacaCCTTTGGTAAAGGTTTGTTCACCTTGTTCCTTCTCCGTATTTCTGACCAACGAGTGAAATGAGTTTTACGAAGATGTTTTCaggctccacacacacacacacacacatgcttttagtttagtgcagtgtgaaaccaaaccaaaccaaaaggaatcaatttcactctgattcagactcttAATGTGCTGTGTagcattttctaaaataaataaataaataaataaataaataaattcatgaacaaacacaaacactctgtATTGGAACCGTGAGAGACGTCCTAACACAACCACGCTTAAAAGTACACATCCACTACATAAAAACCCACCGTagatactattattattattatttttttatttttattaatttctgaaCCAAACACAAATGACGTGAACCTGAAGGGAAACTCCGTGAAGTTCCTAAGAGTTTGTCACTTACCACCAAACTTATTGAATCCTCCACGATCGCCCATTCTGatggagagggaaagagaagcGAGACGGATTGAAGGTGGATGAGGGCGGGGCCCCGTTTCACTCTCGACGTCGCCAAGGGCTTCCCTCCATCACTCcgtatttaaacaaaacaaaacaaaaacaaaacaaaaaaaaaccttctagAAGATCTTTAACCCTCCCATTTTACTCAGAGTCACCTTCCTGTTAACCCATCACACCCTCCACggggatttgtgtgtgtttggatcgGATGACCACCGACACACgactcattattttatttatttatctcatcGTATTGACGTACAGGACACACACCCAATTTCACCTTAAACCTCACCACTTCTTCACCAGGGCTCAACATCTGCTTACGTCTCTGAGGACTTTTTAATTCCTTAACCATAAGGTAGAACCTTCACTTCATGatctggatgatttttttttttttttttttggtttaaatgcaATTCAACAACCGACTGATGACGTTCCCCCAGttttctagctttttttttgttgttgttgttgttgtttacactTGTGAACACTTCttaatcctgtttctctccCATTCTTCAAAACGGAAAAATAGGAGAACCTTGACGAACCGAAAGCCTAGGAAGGAGATTTAGAGATtttgttaaaacattttcatcacacagttttgtttttttcccctgacgGAAAGGATGAAGCACAGGAGTGATGAGGAGACATCGGGTGAGCCACAAACATCTTTCTGCACTAAAATAACGACgttactgaatcattttttttgttgttgttgctgaaaaaacattttaagccGGTCGAttacttacttacacacacacacacacacacacacaccagtaaaTTTCATCTATGTTATTTTACCCATGACACATCACACTCTATCCTCTTAAttattatatgttaaatattaacgTTACCATGAAACATTGTTCCAGGAACTCTTCtgtacatgcgcacacacacacacacacacacacacacacacacacacacacttcaacataAGGCACTTCCTGGACCATGAAAGTTTCTAGGAACGCCCTTTTAGACCAAGATGTTCACATCGCCTCCTCTCAGTAGTACATCAGGAGGCCATTTTGTTTTCCACCAGAGTCTCAAGACCGAAATATTTCCCTTCACACTATGACATCATCATTCAGGTCACGATTTGTCCgttctgttcattttctctttttaggAAACACTCTGGCTTTGTTTTAGCCGCTTTAAGAATGTGGATTTGATCAAAAactcataataaaaaaaaattaaaaaaaaaaaaagaaaagatcatAATAAttgcattgtgtttttatttagttctgccctgaataaactacttcacacagcagatgtttCCATCtcgtccacaagacacaataataactgaatctACACACAGGAACCAGTTCAGAAGTTTCCATTCGCTCGATtcttaatcctgtgtgtgtttcctgatgatcagagactgtttttatgttttgtgaaagttGTTCATGAggctcttgtttgtcctgagcagttaaactgcacactgttcttcagaaaaatcctccagctcctgcaccttctctgcttttccaccatcttctgCGTATCTGACTCCTTTCCATCAGCAGCTctatgatgctgagatccatcttttcacactgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240973 lncRNA downstream 26203 693499 ~ 693886 (-) True G203471
TU240908 lncRNA downstream 50600 665538 ~ 669489 (-) True G203425
XR_004579336.1 lncRNA downstream 153291 551404 ~ 566798 (-) True LOC117598763
TU240717 lncRNA downstream 170378 549463 ~ 549711 (-) True G203271
TU240714 lncRNA downstream 186506 533292 ~ 533583 (-) True G203268
TU241007 lncRNA upstream 1527 765451 ~ 766214 (-) True G203499
TU241016 lncRNA upstream 13420 777344 ~ 805841 (-) True G203502
TU241018 lncRNA upstream 14990 778914 ~ 800162 (-) True G203504
TU241026 lncRNA upstream 28033 791957 ~ 849865 (-) False G203510
TU241032 lncRNA upstream 53646 817570 ~ 884412 (-) True G203513
XM_034309729.1 mRNA downstream 75503 642509 ~ 644586 (-) False si:ch73-248e21.5
XM_034309730.1 mRNA downstream 75503 642509 ~ 644586 (-) False si:ch73-248e21.5
XM_026911438.2 mRNA downstream 75503 642509 ~ 644586 (-) False si:ch73-248e21.5
XM_034309731.1 mRNA downstream 75503 642509 ~ 644586 (-) True si:ch73-248e21.5
XM_034309728.1 mRNA downstream 75658 642509 ~ 644431 (-) False si:ch73-248e21.5
XM_034309761.1 mRNA upstream 156083 920007 ~ 931906 (-) True clec19a
XM_034309753.1 mRNA upstream 280345 1044269 ~ 1046535 (-) False si:dkey-66i24.7
XM_034309766.1 mRNA upstream 292446 1056370 ~ 1061679 (-) False LOC113528078
XM_034309765.1 mRNA upstream 292446 1056370 ~ 1061677 (-) True LOC113528078
XM_034309764.1 mRNA upstream 292446 1056370 ~ 1061670 (-) False LOC113528078
TU240668 other downstream 230358 486222 ~ 489731 (-) False G203254
TU240540 other downstream 386445 331541 ~ 333644 (-) True G203154
TU240560 other downstream 557505 162126 ~ 162584 (-) True G203170
TU240322 other downstream 665814 37599 ~ 54275 (-) False aldh16a1
TU241063 other upstream 146193 910117 ~ 911228 (-) True G203544
TU241084 other upstream 280813 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241260 other upstream 501738 1265662 ~ 1345171 (-) False G203695
XR_003402975.1 other upstream 735337 1499261 ~ 1499350 (-) True LOC113528660
XR_003402974.1 other upstream 735591 1499515 ~ 1499605 (-) True LOC113528659

Expression Profile