RNA id: TU241018


Basic Information

Item Value
RNA id TU241018
length 254
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G203504
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 778914 ~ 800162 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacacacacacacacacacacacacacacactcacacacacttacacaaaaTCCTTCCGCGCAAAACAAAATGCTCAGTTTTTCCACCTACTCAGATCCAAAGTCGCATCTCAGAAAGCGTCGCTTGAGTTCCGGTCCAAAACCGAAAGCTCACAAACCTTTAAATTTCACCTCCAAGCGCAAAAGAAGAGTGAATAATACAGAGAGCCGCCATGGCGTAACTAACCTGTACACCTCGCCTGTCC

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241007 lncRNA downstream 12700 765451 ~ 766214 (-) True G203499
TU240956 lncRNA downstream 14990 720089 ~ 763924 (-) True G203458
TU241032 lncRNA upstream 17408 817570 ~ 884412 (-) True G203513
TU241024 lncRNA upstream 48042 848204 ~ 849865 (-) True G203510
TU241062 lncRNA upstream 102875 903037 ~ 903332 (-) True G203543
TU241064 lncRNA upstream 111794 911956 ~ 913561 (-) True G203545
XR_004579337.1 lncRNA upstream 139346 939508 ~ 940343 (-) True LOC117598764
XM_034310158.1 mRNA downstream 26671 750063 ~ 752243 (-) True LOC117598979
XM_034310157.1 mRNA downstream 28456 739668 ~ 750458 (-) True LOC117598978
XM_034309731.1 mRNA downstream 134328 642509 ~ 644586 (-) True si:ch73-248e21.5
XM_034309761.1 mRNA upstream 119845 920007 ~ 931906 (-) True clec19a
XM_034309753.1 mRNA upstream 244107 1044269 ~ 1046535 (-) False si:dkey-66i24.7
XM_034309766.1 mRNA upstream 256208 1056370 ~ 1061679 (-) False LOC113528078
XM_034309765.1 mRNA upstream 256208 1056370 ~ 1061677 (-) True LOC113528078
XM_034309764.1 mRNA upstream 256208 1056370 ~ 1061670 (-) False LOC113528078
TU240992 other downstream 28115 741244 ~ 750799 (-) True G203488
TU240991 other downstream 29553 742693 ~ 749361 (-) False G203488
TU240994 other downstream 35521 741397 ~ 743393 (-) False LOC117598978
TU240668 other downstream 289183 486222 ~ 489731 (-) False G203254
TU240540 other downstream 445270 331541 ~ 333644 (-) True G203154
TU241063 other upstream 109955 910117 ~ 911228 (-) True G203544
TU241084 other upstream 244575 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241260 other upstream 465500 1265662 ~ 1345171 (-) False G203695
XR_003402975.1 other upstream 699099 1499261 ~ 1499350 (-) True LOC113528660
XR_003402974.1 other upstream 699353 1499515 ~ 1499605 (-) True LOC113528659

Expression Profile