RNA id: TU241024


Basic Information

Item Value
RNA id TU241024
length 1630
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G203510
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 791957 ~ 849865 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgatttaaactatcttgagcatttttttttgccacgtcaaacaaatgacaaaaaaaagaagaatttcaaaTCAAATTATTAGAAGTGAAGTGATTTAATTAggcagatggagagaaagaggtaGGAAGAGTTTTTGTCTTTCTTGTGTTAAATATGTGAAAAGTGTAAATGCCGTCTCAGATACAGAACCTATAGGGTTAATGTCTATTATAAACACACGGATTAATGCTAACACGTGAGTAGGTCAAAGAAACATTAGCAAAAGTAAAATGATGCTTGGAGTGTAAATCGAAACATCTGAATTCTCTAAAATCACCTGTTAATAACGAGTCACTCTGAGAGGCTTCTCTATAttagcaataaaaaataaaatagtaataaattcaGTTTACAAAAATAGCTTTGCCctggtgacatttttttttctttagatttaGGTGTTGCTCAGGGGAATGTGTctgcccatttttttttattattaagtacGGAATAAAACCTAACGCAgcacgctgttataggacaacgctcagcaccttctgaccaatcagaatccagaactcgaCAACACTGTGGGAAAACGTACTGCAACACGTCTTTTACAGACAAACGGGTCAAAACTAACTTCCTTCACAAGTCCACGACTTTAACGTCCTCTCCATCCTCTTTCTGTATGTTTCTTTGGCCTCACGTGTCTCTGGCTATGGAATATAAGGATAACGTGTAGACTGTGgattttatgattaaataaacGCACTAAGCAGCAGTGCGTCACGGTTAAAACATCCACCTGGTTAGAGTAATAAACCTGTCTGAAAGAGTTTGATtcgtttttaaataataatgactgATTAGTCCAGTGATTCTCTTAAAAATCTTGAcacccccctcacacacacacccacacacacacacacacacacacacacacacacacacgcacactgttTATGTTCCTGATGATTAAAAATGGGCGTGTCCACACAATTACAAATCCTTTGGAAGGAGGAAGATaattatattgttaatattataaaCGGGAAACAGAACGAAGACACTAAGACTCTAAGACACTAAGACACTAAGACACTACTCCCTTCCTGTTTCATTAGTCCCTGGCATTTGTGTCCactgtgtattatgtgtgtgtatgtatagaatgatgatgatgatgatgatctcaGTCTGTCTTCGTGTCTCCTGATGTTCCCCGTCCTCATGCGTCCTTGCCTCTGGTTTTCAGAGGGAACGTGTCCACCCACTTCTGCGTGCGAGCTTGGCACTGCTGCCAGTCGTACAGCGGGCGGTAGTTGAAGTGGCGCAGCGCCTTGTCCGTGCGCACGGTGAAGGAGGTGGTGGCGACGGCCAGCGTGTAGCGGTTCAGCAGCGGCGTGAAGTCGCGCACGGGCTTCAGCAGCCAGTGCAGCAGCTCGTTTAAGCACGCCAGCATCCAGAGCACACAGAGCGGCATGCGCAGCGAGCGGAAGTTAAACGCAGACAGGAACTGCATGTTGAATTCCTCGTAGCTCTTGTAGGGAGAATCGTCGTAGCAGAAGTACGCTTCACCCCCGAGTCGCTCGGGATGCTCGCGTAAAGCCTGCGCTGCCAGCGTGTGCATCCACGCTACGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241016 lncRNA downstream 42363 777344 ~ 805841 (-) True G203502
TU241018 lncRNA downstream 48042 778914 ~ 800162 (-) True G203504
TU241007 lncRNA downstream 81990 765451 ~ 766214 (-) True G203499
TU240999 lncRNA downstream 94382 752085 ~ 753822 (-) False LOC117598979
TU240988 lncRNA downstream 102363 737869 ~ 745841 (-) True G203486
TU241062 lncRNA upstream 53172 903037 ~ 903332 (-) True G203543
TU241064 lncRNA upstream 62091 911956 ~ 913561 (-) True G203545
XR_004579337.1 lncRNA upstream 89643 939508 ~ 940343 (-) True LOC117598764
TU241090 lncRNA upstream 97865 947730 ~ 1036631 (-) False si:dkey-66i24.7
TU241099 lncRNA upstream 104819 954684 ~ 956624 (-) True G203564
XM_034310158.1 mRNA downstream 95961 750063 ~ 752243 (-) True LOC117598979
XM_034310157.1 mRNA downstream 97746 739668 ~ 750458 (-) True LOC117598978
XM_034309731.1 mRNA downstream 203618 642509 ~ 644586 (-) True si:ch73-248e21.5
XM_034309761.1 mRNA upstream 70142 920007 ~ 931906 (-) True clec19a
XM_034309753.1 mRNA upstream 194404 1044269 ~ 1046535 (-) False si:dkey-66i24.7
XM_034309766.1 mRNA upstream 206505 1056370 ~ 1061679 (-) False LOC113528078
XM_034309765.1 mRNA upstream 206505 1056370 ~ 1061677 (-) True LOC113528078
XM_034309764.1 mRNA upstream 206505 1056370 ~ 1061670 (-) False LOC113528078
TU240992 other downstream 97405 741244 ~ 750799 (-) True G203488
TU240991 other downstream 98843 742693 ~ 749361 (-) False G203488
TU240994 other downstream 104811 741397 ~ 743393 (-) False LOC117598978
TU240668 other downstream 358473 486222 ~ 489731 (-) False G203254
TU240540 other downstream 514560 331541 ~ 333644 (-) True G203154
TU241063 other upstream 60252 910117 ~ 911228 (-) True G203544
TU241084 other upstream 194872 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241260 other upstream 415797 1265662 ~ 1345171 (-) False G203695
XR_003402975.1 other upstream 649396 1499261 ~ 1499350 (-) True LOC113528660
XR_003402974.1 other upstream 649650 1499515 ~ 1499605 (-) True LOC113528659

Expression Profile