RNA id: TU241064


Basic Information

Item Value
RNA id TU241064
length 1532
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G203545
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 911956 ~ 913561 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atttctttctcttaaatCTCCAGCATCACATATTTGTTCAGTTCTTATCATTCATACACAGTgtaagtaatatatatatatatatatatGTTTAGCAATAAgtttatctaaataaatatcttcactggcacatttttcGTTATTCTAAGGTAGTTTTTTctactttaattaaatattaacagtGAGATTTGCACATACAGAGTGTGAACAGTTTCACTACGAGGCACATACAGCGTAAAGAGACGTCCACGATATAAAGCTACGGCGATTTCAGCGTCACGCCGATCGTCTAAACGCGTTTATGAGCCAGACAGACGTGTGGACGAGAGACGAGGCAGGACGAGACACACCACTACGACACGGAGATTAAAAACAGACATGGACGTCTGCACCTTTTATCATCTAACTCCAACACCAAAAACAATTCCATCTCACgtgagaatattaaaaaaataaaaaacacttaaacacataAAACCTTCACTCTGTTGACAAACACACTTGTGGGAACGTGAATGAAGGACGACAACACAAGTCTTGAGCTCTGTTTGCATGTGAGTTAGTGttataaataattcagtttGGAGTGAGCAAATATTTTCACACGCTtgctgttttcatgttttcatttcgGGCCTAACGTTTTTCACCCAAAGCGCTGGTATAAATGTGCAGAGTTAAATCCTTTCTTGCTTTCAAACATCAATATAAAGTTTACTTTTGgctccacatcagattattcgCACTTAACAAATCTCTTAAATTTGGATTATTTGGGATTTTTGTGGACGCTGAccgcaacagcaccaccaacaggtcgtaataaaaacacacagaatgatgtgaagaCGTgtgaagtgaggctggggctgatttctttctcacccagactgtagattcatgcagccaatcagtgacagtCGTGCTAGTCAGGTGACTGCACACAATGACACGCCCCCTAGATTTGAACTCTATTTGCGCtgatatttttacacacatccTGAAATGCTGAACGTGAACCAGACGGATGAATTACTAAACGAAACAGTTTACTAGACTAAACACTCCGCGAGAAATCAGCATACAAACATGAAGTGCaagagtttttttgttttcatgtgaatgaaagagttacaacttttgtgttgttttgttgatttGATTGGAAGAGTCGATTCAAGTtgatgcctgtttttttttttttaagaaaatgagAGGATGCGATTTGATTGGACACGTTATATAAGAGGAGTTTTAAAGTGGATCCGAAAAGCTAACTATAATGGGgatgagaggagctgatttgattggacagttaTGTTTAAAGGGgatgagaggagctgatttgattggacagttaTGTTTAAAGGGgatgagaggagctgatttgattggacagttaTGTTTAAAGGGgatgagaggagctgatttgattggacagttaattttaaattggatgagaggagctgatttgattggacagttaTGTTTAAAGGGGATGAGAGGAGCTGAATTGATTGGACAGTTAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241062 lncRNA downstream 8624 903037 ~ 903332 (-) True G203543
TU241032 lncRNA downstream 27544 817570 ~ 884412 (-) True G203513
TU241026 lncRNA downstream 62091 791957 ~ 849865 (-) False G203510
TU241024 lncRNA downstream 62091 848204 ~ 849865 (-) True G203510
TU241016 lncRNA downstream 106115 777344 ~ 805841 (-) True G203502
XR_004579337.1 lncRNA upstream 25947 939508 ~ 940343 (-) True LOC117598764
TU241090 lncRNA upstream 34169 947730 ~ 1036631 (-) False si:dkey-66i24.7
TU241099 lncRNA upstream 41123 954684 ~ 956624 (-) True G203564
TU241118 lncRNA upstream 66811 980372 ~ 981015 (-) True G203577
TU241085 lncRNA upstream 120328 1033889 ~ 1066820 (-) False si:dkey-66i24.7
XM_034310158.1 mRNA downstream 159713 750063 ~ 752243 (-) True LOC117598979
XM_034310157.1 mRNA downstream 161498 739668 ~ 750458 (-) True LOC117598978
XM_034309731.1 mRNA downstream 267370 642509 ~ 644586 (-) True si:ch73-248e21.5
XM_034309761.1 mRNA upstream 6446 920007 ~ 931906 (-) True clec19a
XM_034309753.1 mRNA upstream 130708 1044269 ~ 1046535 (-) False si:dkey-66i24.7
XM_034309766.1 mRNA upstream 142809 1056370 ~ 1061679 (-) False LOC113528078
XM_034309765.1 mRNA upstream 142809 1056370 ~ 1061677 (-) True LOC113528078
XM_034309764.1 mRNA upstream 142809 1056370 ~ 1061670 (-) False LOC113528078
TU241063 other downstream 728 910117 ~ 911228 (-) True G203544
TU240992 other downstream 161157 741244 ~ 750799 (-) True G203488
TU240991 other downstream 162595 742693 ~ 749361 (-) False G203488
TU240994 other downstream 168563 741397 ~ 743393 (-) False LOC117598978
TU240668 other downstream 422225 486222 ~ 489731 (-) False G203254
TU241084 other upstream 131176 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241260 other upstream 352101 1265662 ~ 1345171 (-) False G203695
XR_003402975.1 other upstream 585700 1499261 ~ 1499350 (-) True LOC113528660
XR_003402974.1 other upstream 585954 1499515 ~ 1499605 (-) True LOC113528659
XR_004579451.1 other upstream 1089973 2003534 ~ 2007788 (-) False LOC113527889

Expression Profile