RNA id: TU241090


Basic Information

Item Value
RNA id TU241090
length 2234
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id si:dkey-66i24.7
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 947730 ~ 1066820 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatgtttttattttgaagacagaagttcagcaataaaaacaagATCAAAGCTGAAAAATAAGAAAGCTGtaaaatgtgttcatgtgtgtaaacatttttatttttatttaatgtcaccTTTCTTATGTTTATTTCTAGCTGTTGTAttgaattctttctttctctctctctctctctcttaaatgTACACCCTGGCTGTatttgtaaaacattaaaaaacttTACACACTGCTCTTCTTTACAAACAGCCAAGACCTGTTTCTACTGTTCTATCACCTCAACTTctgctttaattaaaatgcataaattaacCCTCAGGTAGTTTGGGTCAAGATGACTCTTGTACACTATACaatcaaaagtatgtgcacccctgaccttcacacccatatgtgcttcttcccgaaaagtttgaagcacacacttgtatagaacgtctctgtgtgctgtagcattacagtttcctttcactggaactaagaggctcaaacctgttccagcatgacaatgcccctgtgcacaaagcgagctccatgaagacatggtgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagctctgacctcaaccccactgaacacctttgggatgaactggaacaccgactgaaccccagacctcctcgacatcccaacatcagcgcctgatctcactaatgctcttgtagctgaatgaacacaaatccccacagccacactccaacatctagtggaaagacttcgcagaagagtggagctcattataacagcaaacacacggggaataaatctggaatgagacgttcaataagcacatatgggtgagatggtcaggggtgcacatactttatAGCCATATCGTGTATATCTATCTATGAAACATGActcatgtatatttattaaaggtaccacaaagctgaatattttaaatatatatatatatatattcacagtATGTATCTGTTTGGTTCTTTATGTGTTCCTATACTTAGCAggattctatttatttatttaattttttaagagAGAGATACTACAGAGATGACTTTGAGGTCATTTTGCTGAGAGTAGCAACATGAAGTGAAAGTGTTCAAAATTAACCTGCGTTTGTAaatctgaaggaaaaaaaaaaagaaaaaaaaaagtgatgttaGTAATTTCCATTTCCTCCATCTCTTTATTTCTACTCCCAACtgcatgggaaaaaaatcatttgggCTTCATAGTCAGCACTCACTTTAATACCAGATGAGCAGAAATAAATGCTACAGGAGGGTGtattgcattaataataataataataataataatagtaataataataaactgagtAGTGAAGAGAACCAGAATTGTACAGATCACACTGCAGCACTTTGTTCATCAGGagtttcttctgtttttttttttttatttatttgaactgAAAGAGCAACGTGAGGAACGATTCTCaccactgagagaaagagagacgagTTCGTCGAGTTCATTCTCAAAAACATCACACCGAGAGACACAGTTCTTGTTTTTGGGGTGAACATGTCAGCACTGGTTCAAACGCAAACCAAAAGTCACCTGTTCATACACTTTACGGCTCAAACAGAGACGCCTTGTTCTTTACGGGACTGCAGAATGTAAGGCAAGCCATTCcttcacatgaacacacacacacacacacacacacacacacacaacacacacacacattttaagcCCACACATTTACACTTCCCCTTtggtttaaatacaaaaaaaaaatgagggaaCTGAACACAAGGacatgttttagttttttttttttttttaaactaacactggataaattacacacacacaaaaaacaatatGATCAGCATcaacaaaaccacacacacacacacacacacacacacacactatgagaggggtaaataaaaaatgatgtacAAAGTGGACGTGCAGCTCCATGAGACACACGTTTACGCCAAACTTGATCTTCCGTGCTCCGAAACACGCCTGATCCGACTCGACACCTAAATTATTAAGCCCTTCAGGAGTCGGCTCACGCGTGCTTCAGACTCCACCGTTAATCCCACGCTCGACGGCCAAAATAACAAGATCATGAATATTATTAAAGATAAtaaacactcacacagcacATACTGTTAATACAATTCGTCaacagcgccccacacacacacacacacacacacacacatacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579337.1 lncRNA downstream 7387 939508 ~ 940343 (-) True LOC117598764
TU241064 lncRNA downstream 34169 911956 ~ 913561 (-) True G203545
TU241062 lncRNA downstream 44398 903037 ~ 903332 (-) True G203543
TU241032 lncRNA downstream 63318 817570 ~ 884412 (-) True G203513
TU241026 lncRNA downstream 97865 791957 ~ 849865 (-) False G203510
TU241093 lncRNA upstream 4860 1041491 ~ 1043647 (-) True G203559
TU241153 lncRNA upstream 74456 1111087 ~ 1111312 (-) True G203609
TU241160 lncRNA upstream 92729 1129360 ~ 1130550 (-) False LOC113528609
TU241185 lncRNA upstream 201533 1238164 ~ 1241189 (-) True G203630
TU241258 lncRNA upstream 229031 1265662 ~ 1266354 (-) False G203695
XM_034309761.1 mRNA downstream 15824 920007 ~ 931906 (-) True clec19a
XM_034310158.1 mRNA downstream 195487 750063 ~ 752243 (-) True LOC117598979
XM_034310157.1 mRNA downstream 197272 739668 ~ 750458 (-) True LOC117598978
XM_034309728.1 mRNA downstream 303299 642509 ~ 644431 (-) False si:ch73-248e21.5
XM_034309753.1 mRNA upstream 7638 1044269 ~ 1046535 (-) False si:dkey-66i24.7
XM_034309766.1 mRNA upstream 19739 1056370 ~ 1061679 (-) False LOC113528078
XM_034309765.1 mRNA upstream 19739 1056370 ~ 1061677 (-) True LOC113528078
XM_034309764.1 mRNA upstream 19739 1056370 ~ 1061670 (-) False LOC113528078
XM_034309709.1 mRNA upstream 74878 1111509 ~ 1119731 (-) True LOC113528610
TU241063 other downstream 36502 910117 ~ 911228 (-) True G203544
TU240992 other downstream 196931 741244 ~ 750799 (-) True G203488
TU240991 other downstream 198369 742693 ~ 749361 (-) False G203488
TU240994 other downstream 204337 741397 ~ 743393 (-) False LOC117598978
TU240668 other downstream 457999 486222 ~ 489731 (-) False G203254
TU241084 other upstream 8106 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241260 other upstream 229031 1265662 ~ 1345171 (-) False G203695
XR_003402975.1 other upstream 462630 1499261 ~ 1499350 (-) True LOC113528660
XR_003402974.1 other upstream 462884 1499515 ~ 1499605 (-) True LOC113528659
XR_004579451.1 other upstream 966903 2003534 ~ 2007788 (-) False LOC113527889

Expression Profile