RNA id: XM_034309715.1


Basic Information

Item Value
RNA id XM_034309715.1
length 2014
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC113528609
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1126684 ~ 1130550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAAAGGTTCATTGAGAAGACAAATGTAAAGTGCACAGGTTATATCTGCTCATACACACGTCAAGAAACAGAACACACCGCAAATCCACCATGGTTCAGACTCTTCTGATTTGGGCCGTCGTTGCCAATTTGCTCCCTCCTCCAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAGTGTGGCAATGTGGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCATTGATATGAGCTCCTGGATCCAGAACAACTCCTGCACTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGACTGGAGACCAAGTCGGAAGTGCAAAATGAAGGTGTCCAGCTCTGTCTACCAGTCCAGCGAGGCCCTGGTCAGCTCCAGCACCTCTTCTATTGAGAACAAGTGGCAGACAGACTTGCAAATAGTAACTCCAAAAGTTCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCGAATATTCAATGCAGAAAACTAAAAAAGACAAGTTCAGCTTCACCAGCCAGACTGTCTCTTGTGGATACTACGGATACAGGGTTTCGAGCCGTCCACTCCTGCACCCAGAGCTGATTAATGAATTCGGAAGTCTCCCTGAGACATATGATGAGTCTACAAAGCACCTCTATTACAAGCTTATTGACGAGTTTGGTACTCATTATATCACAAAGGTGACTCTGGGTGGAGAGGTTCGTTCTGTGACCAGCATCAAGGAGTGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGACGAGGTGAAGATGTGTCTAGACGTGGAGGCTTCTGCCAGTACGGGAATATCTGCAAACCTGCAGACCGAGGCTCATCACTGCAAGCAGGCCAAAGACAAGACTCTGAACAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAGATGTAATTGGTGGCTACACTCAGAGTACCGACCTCCTTTTCTCATCAAATAATGACCCAAAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCGCTCAAGCCCCTTCACGAGTTGCTACCAGCAAAGAACCCAATCCGAGTGCATTTGCGCAATGCCATCAAGGACTACATTCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCCCATGTAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGCAGCTGCAGCTGCCACAACAACCCAGACGTGGCCCTCAACTGCTGCCCCACTCAGAGAGGATCTGCTCATGTGACCGTAACTGCGATCAAAGCCACAGGTTTATATGGAGATTACTTGACTCAGACAGATGCATTCGTCAAGATCCTCCTCAACGGTAAAATCAACGGAGGCCAGACGTCTGTGATCCCCGATGACAACTCGCCCAGTTGGGACTGGGATTTCCATCTTGGAACTATGGACATTACTCATTTCAGCAGCGTGAAGCTGGAGGTGTGGGACGAGGACAGTGATTCAGATAATGACCTTCTCGGGGCATGCAACGTTCCACTGAAATCGGGAGTGGAGAAGAATGCCTGTGCACTCAATCACGGAGTGCTGTATTATAAAGTGCAGGTGAAGTGCATCCCTGGATTGACTGGTCCTTCGTGCACGGAGTACAATCCCTCTCCCATGGAGGCACAGCTAGAGAAACTGTACGTCTCCCGGAATGCTCGCCCGATTCCCAGAGGTATGCTGCTGGAGATGGGAGTGCTCCTCGATGAACGCATTCCCCACTTCAACCAGAGCAACATTCGCAAAGTTAAAGGTCTTGAATTGTAGACCAGTTGTGTTCTTTGTGCATCTATTGCATATTCTCATCATAATGTTTAAAGTAGAACAGGTGCACATAATATTGGCGTATTATTACTAAACCTTTCCTGCTCATGTGTGATGCCTTTTGCCTTTTTGAAAGCTTAATAAATGTCTCATGAAGCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241153 lncRNA downstream 15372 1111087 ~ 1111312 (-) True G203609
TU241085 lncRNA downstream 59864 1033889 ~ 1066820 (-) False si:dkey-66i24.7
TU241185 lncRNA upstream 107614 1238164 ~ 1241189 (-) True G203630
TU241258 lncRNA upstream 135112 1265662 ~ 1266354 (-) False G203695
TU241259 lncRNA upstream 213667 1344217 ~ 1345171 (-) True G203695
TU241318 lncRNA upstream 324637 1455187 ~ 1457398 (-) True G203739
TU241307 lncRNA upstream 368470 1499020 ~ 1500815 (-) True G203733
XM_034309712.1 mRNA downstream 592 1121166 ~ 1126092 (-) False LOC117598757
XM_034309714.1 mRNA downstream 646 1121166 ~ 1126038 (-) False LOC117598757
XM_034309713.1 mRNA downstream 2834 1121166 ~ 1123850 (-) True LOC117598757
XM_034309709.1 mRNA downstream 6953 1111509 ~ 1119731 (-) True LOC113528610
XM_034309710.1 mRNA downstream 7275 1111509 ~ 1119409 (-) False LOC113528610
XM_026916422.2 mRNA upstream 13395 1143945 ~ 1148157 (-) True LOC113528091
XM_034309767.1 mRNA upstream 18045 1148595 ~ 1150039 (-) True LOC117598761
XM_034309720.1 mRNA upstream 45848 1176398 ~ 1178798 (-) True LOC113528092
XM_034309711.1 mRNA upstream 59906 1190456 ~ 1194184 (-) True LOC113528095
XM_026916428.2 mRNA upstream 59906 1190456 ~ 1194135 (-) False LOC113528095
TU241084 other downstream 80129 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241063 other downstream 215456 910117 ~ 911228 (-) True G203544
TU240992 other downstream 375885 741244 ~ 750799 (-) True G203488
TU241260 other upstream 135112 1265662 ~ 1345171 (-) False G203695
XR_003402975.1 other upstream 368711 1499261 ~ 1499350 (-) True LOC113528660
XR_003402974.1 other upstream 368965 1499515 ~ 1499605 (-) True LOC113528659
XR_004579451.1 other upstream 872984 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other upstream 872984 2003534 ~ 2007787 (-) False LOC113527889

Expression Profile