RNA id: TU241220


Basic Information

Item Value
RNA id TU241220
length 1161
RNA type TUCP
GC content 0.51
exon number 3
gene id syt3
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1561524 ~ 1619974 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atagacagagaggagagagacaggagaggaggagagatgaTCCTTATTCTTCTCTGCCTCTCAGTCTAGCCTGTGGCATCCATCCTTCTGCATCCCtgcatccctccatccctccacaGTCCTCCATCCCAGgCAATGTCGGACATTCCTCCAAACCAGCAGTGAATTGCAAAAGACTTGAATGGGGAAACCAGAAGAGTGACTGCATCCCAGAGGAACTACACGACCCAGAATTCAACTCTGCTCTGACACTGTTCAAAGGAACAAACTTTGTACCACTTTCTCTGCCTTTAGCCTAAAACTTACAGCCATAAATATCCAGAGTGCTAAAAAGTTAAAGGATATTCCAAAGTGATTTGGTTTCCATTAATTCACCATGACAAGGACTTTGTGCCCTCGGAAGTGTCTAAAGTAAAAATTAGcatgtaaaagaaaagcagGAGAAATTTGATTCACTTTCTGCTGCAATTCTTCTCATTCTTCTCATTCCTCATGGTCAAAGAACCGATGCTGTCACGAAGGAGGATTAATGTGGCTCCAAAACCGATGGATGTGGAAGCCATTAAGCGCTCCAATTAACTAAGTGGTCCAAAAGAGAAACGTGAGCAAGGCCTCTCtgtcattaaacaaaaaaaagtggcCTAAAGTTTTCCGCTCAGATCCCGTCCGGTTAGCGTGGGCGGGTGTGGGCTACGCCGCAATTTGGGGTTAGGAGTGCGATGCGGATTGGAGGATGTCGGGGGATTGGGAAGAAGACGTGTGCAAGAAGGCGCTGGTGCTGGTGGAGGAGCTGTGCTTCCGCTCGGGAGGATACAGCCATAGCGCCAGATGCCAGGAGTTCAGCGACATGATGAGGGGACCCAACAGACATATTGACACAGagatcTCTGTCAGCCTCCTCTCTGTCATCGTGACGTTCTGCGGCATCGTGCTGCTTTCCGTCTCGCTCTTCGTCTCCTGGAAGCTCTGCTGGTTGCCATGGAGAGACAAAGAGGGTGGTGGTCTGAGCCTGACAGCCGGGCTCCTCCCTGGAGGGGCGGGGCTTCACGGGGTCGCCGGAggctcctccctcctccctcctttaTTGCAGAGGAAAGACACGCACTCCTCGTCCTCTCTTTATCCGTCTCTGGCCCAGGCCGGCCAACACCACCCGCACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241224 lncRNA upstream 28549 1522226 ~ 1533045 (+) True G203662
TU241222 lncRNA upstream 60801 1446989 ~ 1500793 (+) True G203660
TU241208 lncRNA upstream 120579 1362383 ~ 1441015 (+) True G203647
TU241190 lncRNA upstream 248605 1309397 ~ 1312989 (+) True G203635
TU240861 lncRNA upstream 450747 1110529 ~ 1110847 (+) True G203385
TU241459 lncRNA downstream 181554 1772629 ~ 1867011 (+) False G203867
TU241477 lncRNA downstream 233903 1824978 ~ 1825293 (+) True G203885
TU241458 lncRNA downstream 249263 1840338 ~ 1842580 (+) True G203867
TU241499 lncRNA downstream 265348 1856423 ~ 1871560 (+) True G203898
TU241508 lncRNA downstream 314764 1905839 ~ 1922479 (+) True G203906
XM_026917182.2 mRNA upstream 29608 1504878 ~ 1531986 (+) True si:ch211-51c14.1
XM_034309989.1 mRNA upstream 67576 1401808 ~ 1494018 (+) True shank1
XM_034310288.1 mRNA upstream 200134 1353329 ~ 1361460 (+) True kmt5c
XM_034310224.1 mRNA upstream 216557 1324100 ~ 1345037 (+) True ppp1caa
XM_026916593.2 mRNA upstream 295473 1253527 ~ 1266121 (+) True coro1a
XM_034310285.1 mRNA downstream 39997 1631072 ~ 1658296 (+) True med25
XM_034310286.1 mRNA downstream 39997 1631072 ~ 1658082 (+) False med25
XM_034310287.1 mRNA downstream 39997 1631072 ~ 1658082 (+) False med25
XM_026916127.2 mRNA downstream 87237 1678312 ~ 1723798 (+) True lrrc4ba
XM_034309684.1 mRNA downstream 87247 1678322 ~ 1723798 (+) False lrrc4ba
TU241205 other upstream 205267 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 324982 1220512 ~ 1236612 (+) False paqr4a
TU240783 other upstream 510455 1046805 ~ 1051139 (+) False armc5
TU240808 other upstream 803536 753275 ~ 758058 (+) False fus
TU240780 other upstream 828740 726807 ~ 732854 (+) False si:dkey-16l2.17
TU241504 other downstream 292000 1883075 ~ 1885478 (+) False ccndx
XR_004579364.1 other downstream 564524 2155599 ~ 2155849 (+) True LOC117598829
TU242114 other downstream 1412597 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 1601637 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 2375683 3966758 ~ 3986284 (+) True limd2

Expression Profile