RNA id: XM_034310217.1


Basic Information

Item Value
RNA id XM_034310217.1
length 6504
RNA type mRNA
GC content 0.45
exon number 12
gene id syt3
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1561524 ~ 1619974 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTTCAGCCAAACAGGTTCTGTAGGAGATCCTCATCAGTGCATTTCAATAATTTTCCTGAAGGCTGCTCATTGAGAAAGGAAAGAGTTTTCACAGgCAATGTCGGACATTCCTCCAAACCAGCAGTGAATTGCAAAAGACTTGAATGGGGAAACCAGAAGAGTGACTGCATCCCAGAGGAACTACACGACCCAGAATTCAACTCTGCTCTGACACTGTTCAAAGGAACAAACTTTGTACCACTTTCTCTGCCTTTAGCCTAAAACTTACAGCCATAAATATCCAGAGTGCTAAAAAGTTAAAGGATATTCCAAAGTGATTTGGTTTCCATTAATTCACCATGACAAGGACTTTGTGCCCTCGGAAGTGTCTAAAGTAAAAATTAGcatgtaaaagaaaagcagGAGAAATTTGATTCACTTTCTGCTGCAATTCTTCTCATTCTTCTCATTCCTCATGGTCAAAGAACCGATGCTGTCACGAAGGAGGATTAATGTGGCTCCAAAACCGATGGATGTGGAAGCCATTAAGCGCTCCAATTAACTAAGTGGTCCAAAAGAGAAACGTGAGCAAGGCCTCTCtgtcattaaacaaaaaaaagtggcCTAAAGTTTTCCGCTCAGATCCCGTCCGGTTAGCGTGGGCGGGTGTGGGCTACGCCGCAATTTGGGGTTAGGAGTGCGATGCGGATTGGAGGATGTCGGGGGATTGGGAAGAAGACGTGTGCAAGAAGGCGCTGGTGCTGGTGGAGGAGCTGTGCTTCCGCTCGGGAGGATACAGCCATAGCGCCAGATGCCAGGAGTTCAGCGACATGATGAGGGGACCCAACAGACATATTGACACAGagatcTCTGTCAGCCTCCTCTCTGTCATCGTGACGTTCTGCGGCATCGTGCTGCTTTCCGTCTCGCTCTTCGTCTCCTGGAAGCTCTGCTGGTTGCCATGGAGAGACAAAGAGGGTGGTGGTCTGAGCCTGACAGCCGGGCTCCTCCCTGGAGGGGCGGGGCTTCACGGGGTCGCCGGAggctcctccctcctccctcctttaTTGCAGAGGAAAGACACGCACTCCTCGTCCTCTCTTTATCCGTCTCTGGCCCAGGCCGGCCAACACCACCCGCACTTCTCTGACCTGATGGGGGTGGAGGGAGGAGGGGCCATGATGGTGGGCGGGGTTATGGGCGGGCCTCAGGAAATGCAGGAGCACTCCTACCTGGACATGGACTCCTACCCCAACAACGCAGgGAATATTAAACTGAGCCAGACGTCTCCTGAACTGCCGCCACCTGACggaggatctgctgctaaagatCTGGCCAACGCCCACTCGCAGCCGGTCACCCCCAGgccCAAGCCCATGACTCATCAGCTCTCTAGTCCTGATTTCCACGGAGAGGAGAAGAGCGAGCAGGTGACCAGCATTGGGCAGATCAAGCCGGAGCTGTACCGGCCGCGGCAGGGCGAGCAGGGCGAGGGCAAGGAGGGCGACACGTGCGGAAAGATCAGCTTCCTGCTCCGCTACGCCTTCAAcacGGAGCAGCTGGTGGTGAAGATCCTTAAAGCTCTGGACCTGCCGGCCAAAGACGCCAACGGCTTCTCAGACCCGTACGTGAAGATCTACCTGCTGCCTGACAGGAAGAAGAAGTTTCAGACCAAGGTGCACAGGAAGACCCTGAACCCGGTGTTTAATGAGACGTTCCAGTTCGGCGTGCCGTTGGCCGAGCTTCACTCTCGCAAGCTGCACTTCTCCATCTATGACTTCGACCGTTTCTCCAGACacgacctgattggtcaggtggtGGTGGACAACCTGCTGGACTTCAGCGAGGGCAGCGGGGACAAACCCATCTGGAGGGACATTGTGGAAGGAACAGCGgagaaaGCTGACCTCGGGGAGTTGAACTTCTCACTGTGTTACTTGCCGACAGCCGGCCGACTAACCGTCACCATCATCAAGGCCACCAACCTCAAAGCCATGGACCTGACTGGCTTctcagacccGTATGTGAAGGCGTCTCTGGTGTGTGATGGACGCAGGTTGAAGAAGAGGAAGACGTCCATTAAGAAGAACACGCTGAACCCCACCTATAACGAGGCTCTGGTGTTCGACATCCCTAACGAGAACATCGAGAGCGTCTCGCTCATCATCGCTGTCATGGACTACGACTGTATCGGCCATAACGAGGTGATTGGGATGTGCCGTGTAGGCAGCGATGCTGAAGGCCCTGGCAGAGAGCACTGGACGGCCATGTTGGTGAACCCCCGGAAACCCATCGAGCACTGGCACCAGCTGGTGGAGGAAAAATCCATTAACACGTACGTGTCGAAGAACGCTACAGCCTCGCCAAAACCACACATCGTGGTGGACAGTCCTCACTCCGACTAAACACgtCTGCATTGCCATTGCTCCAGACGTCCATCTTTTCCTCTCATCTGTGAATAAATCTCTCCATCAAGCAAAAGAAGCGGAAAACAGACACTGCAAAAAACccgacacaacacacacacactgagtagtCTATAgacccaccccacacacacacacacacacacacacacacacacacacacacacatacacgagcaggtacacacacctCGGCGGAAGGCGTGGTGCAGCAGGTgtgacattacacacacatgttggtttattcaggggaaaaaaacacgaTGCACATTCCCAAATCTAAAGATCTGAAAATCTACAAAGTatgtttatttagttatttaaaacTGAGCCTGAGTggaaaaaacagatttttaaaagaagtCGTAGATGTAATTTCACTATGGACcattagggtgtgtgtgtgtgtgtgtgtgtgtgtttaggaaaaaaaaggctgtagTAAATCACTAGAGTCAGTTTTCACAGggacggaaaaaaaaaaaatctctcgaGAGGAGGACTACTTTAGTCTCGCATCAGGAGGACGGAAAACGAGGACGGACCCGTCGGCTGAAAGCATGCTGCGCATCCTCCAAATACGTCCTCCTCTCATGCTCCGAGAATGACaacaagctttttatttttctatccatccagccatccatccaacTGTTTTGTTGATCCATGTATCTTTTTGTAGAACAGACTGTGCTTGGAGTGATGATGGGACAActttgaagggaaaaaaaacaacaaaacaaaaaaaacaaacaggcagCGAAACTTTCTGGAGGAACTAATGATTCAAACGATAAAACGGAGGACCCTAAACGGGGACGGAGCGCACTTTAGCGATGGACAAGCACCCTTTTTTGGGAGAAAAGGAATTCtgccatagtgttttatttttgtaccaTTCCTTCATTTTTGACACGCTTGCATTTCCTCGGAGAGACGCACGCATCCGTGATCCTTTTACGTACGTGTTCGTTGGGGTGTTTTACTTCTTGGAGTTCGTTTTTTGCTTGCGTGTACGCCTGTGCGTCTGTTCTGTCCGTCACCGTGCTCCTGTGTATGACATGTTCTGGCGCCTGACCTCTATCCTCTAATCCTCTAACCCTAGAACGTCTGTCTGACCCTGTAGCCCCGCCCACTGGCACTAGCTCCTCCCACAGCAGCTCTTGTTAAAGCGAAATGTGTCTTCTGTCCTGTGTCTTAGAAGATCGGTTTCTTTGTGCTCTCTGTGTCTGAAGCCGGCGGCTACgaggaaggaggaagaaaaaaaatgtcagttatattttatttttttttaaattatcattatttttatttttgcctgagtgtgctgttttgtttgtggacattgtttacattgtttaaGTAGAGCTGGGCGATAAAACCAAATTGTCCCTGAAAGCATTTcgttaattttattatatatgtcatttattaaaaacaaaaaagaacaattttCTACAGTTTCGTTTCAGCTGCTTtgccaacagccaatcagaacaaagGTGCAGCAACCAATGAAAACAGAGAGGAGGCGGGATTTTATATCATACTGCTTATCatatcattaataaacaaatcttCTCTAGTGCTGTTCTTAGAAAagaattatctatctatctatctatctatctatctatctatcttttcaTGCAATTTCTCCTTTCCCTCTTTAtttctccttcatctctctttgtctttccctcactctcttctttctctccctttatcTCTTCTATTATTCTATCCCTCCTGCCCTCTCCCtcttttattccactcttttctttctccttttacTTCTCACTCTCTTTGTATTTACCCAgttctatctgtctatctcgtcccctttcttcctctttttcaccATCCATCTTTCCTTGCCTcatcttccctctctctctctttctatcgcTTTCATTATCTTTCACTCCCTCTTGCTCATCCACTTTCGATCATTTtatctcctttctctctttattcctTTCTGcttatttcttctgttttctcattttctatttgtatttatccgtctccctctttctctctcctcttccccCTTTGGTCCTCCTTtacttcatctctctcttttttattctctgtcACTCTCAGTCCATCTACCCTTCCCTTCATTTATCATCGCTTATatagcttaaataaataaatctcgtCTCTCAGTGTTCTAAGAAATAAACTGACCCGTGTGTTAATAAACAAATCTTTCCTAATTATTGTCACATAATCATTAATtgcaattatatgtttttttttcatgtcgtCCAGCTCTATTCTTTCCAAacatgagacagagactgatggggactttcttcatttcttcatcttcatctctcTTCGTCATACTACTACATCGCTGCACACCATCACTCACATCAGTTCAGGACAATTACAGATACGTTAACCAGCAAACCTGATCGATGTCAAATGTTGCTAATGAACAGTGGAAGTTTATAAAGCTTTAGAAATGCACCCTAGCTTTTGCAACTAAACGTAGATTCTATATTTCTCTATAGActctatatataaatgtatacagaTATTTCTGAAAACATCAATTTTGTCCCTCTATTTTCAGTATGACGCTAACATGCACATGACAGCCCAGTAGGTTGCAGTAATGCGTCATAAAGTATTAGACCAAGTGCAGAAGGTACAGGCTCTTTATtggtacctagaataatgaagactaAAGCAAGGGGCAGCGCTTTTTGAGCGCTGTATTCAGGAGCAGTACAGCGCCGATCATATTCTGTCTTCTTCAACAAgggtgtaaaaataaaacaaaatgaaattaaactgcaaaataagaaattacagaccACAAATTAGCAGCCTGGTCAGTTATAAccagcacatttaaaacatatgCAATGGGCTTGCGCAGGTTCACACTGTGACATCAGCATTTTCGAATAATATACTTTTAATCCCAGCCATGCAAAACCAATGAAAAAGTATGTAGGTTATTTTCAAGAAAGTTTAGTTTTTAGTGAcccaaaatgctgttttcaaaaatatgcgtataaatattataataaatatcagtaGGTGGGTGGGGCCTTACTGGTATTAAATTAAGGTCCACACAAACATTTGTAGATTGCGAGTTTGGGCCTGCTAACCTGTCTGAGTCGATCGCTAGCAAGCACTAAATCACCAACTATAAATGGTTATGGTGTCTAATCTAGCTGcctgtctgactgactgactgactgcaggcctcttttttaaaataaattatccATAGTATAGCGCAAAATCATGGACTGTCACAAAAGTGTAATTagttggggaaaaaatagcGTGACTCGACCTTTAGACTACTGTATCAGTACAAACAAGGGTTAAAACGTCATCCGTTTCTCTCTGGGcccatacactcacacacacacacacacacacgcaccaacGTGGGTTCAATCCTCTAAAGCAAAGGACATTCTGTCATTTcctgtctttgtttctgttctgtttgctGTTCTGTTTGCTTTCTcgctcttttttccttctctctatccctccttctctggctgtgttccaaatgcAGGTTTAATATCTTATTGGAATTCATGCTAGCAAGTTGTGATCATCGTTCAAACTTTAGACGTCCTTAAAGGAGAGTCGCTAGGACAGAGGACACCAGGGATTATTGCTAGCATGTGTGGTTGCTAGCTAAAAGCACGCAGGCTAATGGggcatttaataataataataataataataataataataataaaaaacaaatctacAAGATCTGTTTCCACATGGATCTGTTCCTCACTCtcttttatttactctttttttctgtcatgcTTTGTATCTTTTTCTCCAAGCAAaggaatctctctctctctctctctctctctctctctcattcaatctccttctctcttattctctgtctctcctatctgtctcactttttctatctctcttgtTTAATCTTAATGTTAATCTTAATTTTCACCCTGTCTCCCCCTCATACTATcttgttttcttctctctctctctctctttctctctgtctctcacatctgtttttccttttctttcatttcaccTATTTCTGTCTCTTGTTCCATCTt

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241234 lncRNA upstream 10592 1565356 ~ 1566629 (+) True G203672
TU241224 lncRNA upstream 44176 1522226 ~ 1533045 (+) True G203662
TU241222 lncRNA upstream 76428 1446989 ~ 1500793 (+) True G203660
TU241208 lncRNA upstream 136206 1362383 ~ 1441015 (+) True G203647
TU241190 lncRNA upstream 264232 1309397 ~ 1312989 (+) True G203635
TU241459 lncRNA downstream 152655 1772629 ~ 1867011 (+) False G203867
TU241477 lncRNA downstream 205004 1824978 ~ 1825293 (+) True G203885
TU241458 lncRNA downstream 220364 1840338 ~ 1842580 (+) True G203867
TU241499 lncRNA downstream 236449 1856423 ~ 1871560 (+) True G203898
TU241508 lncRNA downstream 285865 1905839 ~ 1922479 (+) True G203906
XM_026917182.2 mRNA upstream 45235 1504878 ~ 1531986 (+) True si:ch211-51c14.1
XM_034309989.1 mRNA upstream 83203 1401808 ~ 1494018 (+) True shank1
XM_034310288.1 mRNA upstream 215761 1353329 ~ 1361460 (+) True kmt5c
XM_034310224.1 mRNA upstream 232184 1324100 ~ 1345037 (+) True ppp1caa
XM_026916593.2 mRNA upstream 311100 1253527 ~ 1266121 (+) True coro1a
XM_034310285.1 mRNA downstream 11098 1631072 ~ 1658296 (+) True med25
XM_034310286.1 mRNA downstream 11098 1631072 ~ 1658082 (+) False med25
XM_034310287.1 mRNA downstream 11098 1631072 ~ 1658082 (+) False med25
XM_026916127.2 mRNA downstream 58338 1678312 ~ 1723798 (+) True lrrc4ba
XM_034309684.1 mRNA downstream 58348 1678322 ~ 1723798 (+) False lrrc4ba
TU241205 other upstream 220894 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 340609 1220512 ~ 1236612 (+) False paqr4a
TU240783 other upstream 526082 1046805 ~ 1051139 (+) False armc5
TU240808 other upstream 819163 753275 ~ 758058 (+) False fus
TU240780 other upstream 844367 726807 ~ 732854 (+) False si:dkey-16l2.17
TU241504 other downstream 263101 1883075 ~ 1885478 (+) False ccndx
XR_004579364.1 other downstream 535625 2155599 ~ 2155849 (+) True LOC117598829
TU242114 other downstream 1383698 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 1572738 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 2346784 3966758 ~ 3986284 (+) True limd2

Expression Profile