RNA id: TU241234


Basic Information

Item Value
RNA id TU241234
length 308
lncRNA type intronic
GC content 0.38
exon number 3
gene id G203672
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1565356 ~ 1566629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGTAGATTGTGTAGAGTAGATTGTGTAGAGTAGATTGTGTACAGTAGATTGTGTAGAGTAGATTGTGTACAGTAGATTGCATACAGTAGATTGTGTACAGTAGATTGTGTACAGTAGATTGCGTACAGTAGACTGTGTAGAGTAGATTGTGTAGAGTAGATTGCGTACAGTAGATTGTGTAGAGTAGATTGTGTACAGTAGATAGTGTACAGTAGATAGTGTACAGTAGATTGTGTAGAGTAGACTGTGTAGAGTAGATTGTGTACAGTAGATAGTGGACAGTAGATTGTGTAGAGTAGATAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241224 lncRNA upstream 32311 1522226 ~ 1533045 (+) True G203662
TU241222 lncRNA upstream 64563 1446989 ~ 1500793 (+) True G203660
TU241208 lncRNA upstream 124341 1362383 ~ 1441015 (+) True G203647
TU241190 lncRNA upstream 252367 1309397 ~ 1312989 (+) True G203635
TU240861 lncRNA upstream 454509 1110529 ~ 1110847 (+) True G203385
TU241459 lncRNA downstream 206000 1772629 ~ 1867011 (+) False G203867
TU241477 lncRNA downstream 258349 1824978 ~ 1825293 (+) True G203885
TU241458 lncRNA downstream 273709 1840338 ~ 1842580 (+) True G203867
TU241499 lncRNA downstream 289794 1856423 ~ 1871560 (+) True G203898
TU241508 lncRNA downstream 339210 1905839 ~ 1922479 (+) True G203906
XM_026917182.2 mRNA upstream 33370 1504878 ~ 1531986 (+) True si:ch211-51c14.1
XM_034309989.1 mRNA upstream 71338 1401808 ~ 1494018 (+) True shank1
XM_034310288.1 mRNA upstream 203896 1353329 ~ 1361460 (+) True kmt5c
XM_034310224.1 mRNA upstream 220319 1324100 ~ 1345037 (+) True ppp1caa
XM_026916593.2 mRNA upstream 299235 1253527 ~ 1266121 (+) True coro1a
XM_034310217.1 mRNA downstream 10592 1577221 ~ 1619974 (+) False syt3
XM_034310285.1 mRNA downstream 64443 1631072 ~ 1658296 (+) True med25
XM_034310286.1 mRNA downstream 64443 1631072 ~ 1658082 (+) False med25
XM_034310287.1 mRNA downstream 64443 1631072 ~ 1658082 (+) False med25
XM_026916127.2 mRNA downstream 111683 1678312 ~ 1723798 (+) True lrrc4ba
TU241205 other upstream 209029 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 328744 1220512 ~ 1236612 (+) False paqr4a
TU240783 other upstream 514217 1046805 ~ 1051139 (+) False armc5
TU240808 other upstream 807298 753275 ~ 758058 (+) False fus
TU240780 other upstream 832502 726807 ~ 732854 (+) False si:dkey-16l2.17
TU241504 other downstream 316446 1883075 ~ 1885478 (+) False ccndx
XR_004579364.1 other downstream 588970 2155599 ~ 2155849 (+) True LOC117598829
TU242114 other downstream 1437043 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 1626083 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 2400129 3966758 ~ 3986284 (+) True limd2

Expression Profile