RNA id: XM_034310210.1


Basic Information

Item Value
RNA id XM_034310210.1
length 4554
RNA type mRNA
GC content 0.56
exon number 32
gene id ppfia3
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1917205 ~ 1987915 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTCAATCATTTTAGTGCAAAGTGTCTTCTACtacttcttctccttctttttcttcttcttcttcatcttcttctccttcttcttcttgctgtgTGAGCGTGTAATGGTGGAAGAGACGCCACAGCATCCGTTTGCTTCATAAACACCACCCCGGTGATGCTGAGATGGAGAAGATGTGGTTATGCATCGCATCTCTTGTAGCTGATCATCCCTAGAGGGTTAGACGGCCTTGGTTTATGCCCCGCCCACCTTTCCTGCCCCTCCCCCACAACCCAGCCGTCCTCCTAGATTCTCCTACTGGTTTATCTGGACCACGCCCGCTTTCTCCACCCCAAACTTCACCCAAACCAAGGAGCTCAGGGGCATTCTGGATGAAGACCAATTAAACAGAAAAgactacattttttaaaaaaatggatgatTTGAAGAAAATGAGAGGACGCAATCTACTCGTGAGCGTCCATATttagaggagaagaaaaaattGTGGACTGAAAGAGGACATTTTGTTCGGAGAAAGGATCGCAGAAAGGTGGACATTTGTAGATAAAGAAATACTTCCTGTTTACATAAAGCATCATCTTTCAAAGAGTACACAGCTCTACACTTCACAGAAAGCTGTAAGcgttttacaaacacacacccacacacacactcacacacacactatcacgtAACCCACTCCCACACTTCCCGGCCTCAGGATGATGTGCGAGGTGATGCCCACTATATCGGAGGACGGtcgtggtggaggaggaggcggGCCGTCCTCGCCTGCCGGGGGCGGGAGTGGCATGGGAGGGGGCATGGGGGGCATCGGGGGTGGCTACGAGGGCGGCAGCACGGGCAACCTGGAGTCTCTGATGGTGAACATGCTGACGGAGAGAGAGCGGCTGCTGGAGAGCCTGAGAGAGACGCAGGAGAGTCTGGGGACGGCACAGCTCCGCCTTCGGGAACTGGGACATGAGAAAGACTCACTCCAGAGACAGCTGTCCATCGCCCTGCCTCAGgagtttGCCGTGTTGACCAAAGAGCTGAATGTGTGTCGGGAGCAGCTgctggagagagaggaagagatcgCAGAGCTCAAGGCGGAGAGGAACAACACACGGttgttgtTGGAGCATTTGGAGTGTTTAGTGTCTCGTCACGAGCGCTCTCTGAGGATGACGGTGGTGAAGAGACAGGCTCAGTCTCCAGCTGGCGTCTCCAGCGAGGTCGAGGTGCTCAAAGCTCTCAAGTCTCTGTTCGAGCACCACAAGGCTCTGGACGAGAAGgTGAGGGAGCGACTGCGTGTGGCTCTGGAGCGAGTGGCCGTCCTGGAGGAAGAGCTCGAGTCCTCTACCAACGAGGTTCTAACTCTGCGTGATCAGATCAAACGACGTGAGCGTGGGCAGGACAACGGTAAAGAGCGCCTCCCGAACGGCCCGTCCTCCATCTTGGATGATGGAGAGATcgacagacagagggagggagagattgAGCGCCAGAGGGCGGAGCTTTCACAGCTCAAGGAGCGACTGGCCCTCATGTGcagacaggttgGAGAGATTGAGGAGCAGCTCACTGCCGCCAGGAGGGAGGTGACCAAGACTGAAgaagccaatcagaagcttcagAGGGAGATTAAAGAGGCTTTGTGTCAGAGAGAGGATATGGAGGAGAGAATTACGACCCTAGAACGCAGGTACCTGAGCGCCCAGCGGGAGGCGACGTCTCTCCACGACATCAAAGACAAGCTGGAGAACGAACTGGCCAGTAAAGAGTCTCTATACAGACAGAGTGAGGAGAAGAACCGGCAGCTGCAGGAACGTCTGGATGACGCAAAGCAGAAGCTCCAGCAGACGCTGCAGAGAGCCGAGACGCTGCCCGAGATCGAGGCTCAGCTCGCTCAGAGAGTGGCTGCTCTCAACAagGCTGAGGAACGCCATGGCAACTTCGAGGAGCGACTGCGACAGATGGAGGCACAACTGGAGGAGAAGAACCAGGAGCTGCAGAGAgcgagacagagggagaggatGAACGACGAACACAACAAGCGTCTCTCCGACACCGTGGACAAGCTGCTGTCCGAGTCGAACGAGCGCCTGCAGCTCCACCTGAAGGAGCGCATGGCGGCTCTCGAGGAGAAGAACGCACTGTCTGAGGAGCTCGCCAATATGAAGAAGATCCAAGATGATCTGCTGGCAAACAAGgaTCAGCTGATTGCGGAATTGGAGAGGCTGCAGCTGGAACTGGATCAGCTGAGGGGCAGGTCTGGCTCCTCCTACTCTCGCTCTCTTCCCGGCAGCGCTCTGGAGCTCAGGTACTCCCAGGGAGGCGGTTCTCTACCTGCCGGCTCCACCACTCACCTGGATCACTATGGCAGTACAGGCTCAGGGGGCGTGGTCAGACGGGCCCACCGTGGACGCTGGGGCGGAGCCAGAGAGGACGCCAGCAAGTATGGCGAATGGGAGAGCGGCGCTTTGCTCGGCCCGGGTTTCGAGGGCGGAGTCGAGGGCGGCTGCTCCGATGATGAGGAGGATCGCGAGACGCTCTTCGGCTCTGAGCTGCTTTCTCCCAGCGGACAGACAGACGTCCAGACGCTGGCCATCATGCTTCAGGAGCAGCTGGAGGCCATCAACAAGGAGATCAAgttgattcaggaggagaaggagaacacGGAGCTGAGGGCTGAAGAGATCGAGAGCCGTGTGAGCAGCGTGGCTCTGGACGGACCCCCGGTTCCTCCGTCCTCTTTGGGAAGAGACGCCAGTGGCAGGACCTTCATTACTCCGTCCCTCACCTCGTCCACCCTGGCGTCCCCCTCTCCGCCCAGCTCGGGTCACTCCACCCCACGCCTGCCCCACTCTCCGGCACGCGAGACCGAGAGACAGAACAACAAGGAAGACGATAGGTCCCTGGCCCTGCTGGACTCCACCCCTCCACCCACCCCTCGTGCGCTGCGATTGGACAGAATGAGCCACACCCACCCCGGAGCCATGCTGGATGACAGCCGCGAGTTCCGCAGTCTCTCGGCAGACGGCAGCAGCTCCAACAGCAGTCAGGATTCCCTCCACAAGGCcagcaaaaagaaaagcatcAAGTCTTCCATCGGCCGCCTTTTCGGAAAGAAGGAGAAGGGACGCATGGGACAGCCAGGCCGCGAGTCCACCTCTTTGGCTTCCACTCCCTCTGATGATCTGGGCTCCGTTGACCCGCTCGGTCTCACCAAGATGGCCGGACCTGTGGACAAGGACCGCCGCAGCAAGAAGAAACATGAGCTGTTGGAGGAGGCGTGTCGTCAGGGGCTTCCCTTCGCCTCTTGGGACGGCCCCACGGTGGTGTCCTGGCTGGAGTTGTGGGTGGGCATGCCAGCATGGTACGTGGCAGCGTGTCGTGCTAACGTGAAGAGTGGAGCGATCATGGCTAATCTGTCTGACACGGAGATCCAGCGTGAGATCGGCATCAGTAACCCGCTGCACCGCCTCAAACTGCGCCTCGCCATCCAGGAGATGGTGTCACTCACCAGCCCGTCTGCCCCGGCCAGCACCCGCTCTtcGACCAGTAACGTGTGGATGACGCACGCTGAAATGGAGTCTCTCACTGCAGCCACCAAACCAGAGCTGAAGGAGTTCAGCTGGGATCAGattctGGCCTACGGTGATATGAACCATGAGTGGGTCGGGAATGACTGGCTGCCCAGTCTGGGTCTGCCGCAGTACAGGAGCTACTTCATGGAGTCTCTGGTGGACGCCCGCATGCTGGACCACCTCACCAAGAAAGAGCTGCGTGGCCAACTCAAAATGGTGGACAGCTTTCACAGGGTGAGCCTGCACTACGGCATCATGTGCCTGAAGCGGCTGAACTACGACCGGAAGGAgttggagaggaagagagatgagAGCCAACACCAGAATAAAGATGTGATGGTGTGGTCGAATGAGCGTGTGATGTGCTGGGTGCAGTCCATCGGTCTGAAGGAATTCGCAGATAACCTGGCTGAGAGCGGAGTGCATGGAGCTCTACTCGCCCTGGACGACACCTTTGACTACACCGACCTGGCGCTGCTCCTGCAGATACCCAACCAGAACACACAGGCACGCCAACTCCTGGAGAAGGAGTACAACTCCCTGATCGCCATGGGAACCGAGAGGAGGCCAGATGAGGACGGCACTAAGACGTTCACTCGCTCCCCGTCCTGGAGGAAGATGTTCCGTGAGAAGGACCTGAGAGGAGTGACCTCAGACTCTTCAGAGACGCTGCCTGCTAACTTCCGCGCCTCAGCCATCTCCACTCCATCTGTGACCCTGCGGAAAGTTCAGAGTGAAGtgtcTCCGAGGGGCGAGTCAGCATCAGTGAGAACATACTCTTGCTGAAGGCCTCAAAAGGGGGCGCTGTGAGCACATGACTGGGAAACgtacagagagaggaaaaaaaagcaatgattatatacatttcgaaaacatgaaaaaaacccCACTGGTCTGAACCATTCTGCAATAACAGAAGATGGAGCTGTGGCAATCggaagaagataaaaaaaaaaaaagaacttaaaGGACTAAAGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241508 lncRNA upstream 11371 1905839 ~ 1922479 (+) True G203906
TU241499 lncRNA upstream 62290 1856423 ~ 1871560 (+) True G203898
TU241459 lncRNA upstream 66839 1772629 ~ 1867011 (+) False G203867
TU241543 lncRNA downstream 20486 2008401 ~ 2008606 (+) True G203935
TU241566 lncRNA downstream 166521 2154436 ~ 2159283 (+) True G203955
TU241570 lncRNA downstream 195322 2183237 ~ 2186164 (+) False rundc1
TU241577 lncRNA downstream 210198 2198113 ~ 2198333 (+) True G203965
TU241588 lncRNA downstream 236634 2224549 ~ 2227164 (+) True G203973
XM_034310055.1 mRNA upstream 30664 1890285 ~ 1903186 (+) True nucb1
XM_034310056.1 mRNA upstream 44335 1883052 ~ 1889515 (+) True ccndx
XM_034310014.1 mRNA upstream 63680 1854742 ~ 1870170 (+) False tbc1d17
XM_034310160.1 mRNA downstream 24318 2012233 ~ 2061070 (+) True slc1a9
XM_026916139.2 mRNA downstream 96637 2084552 ~ 2091453 (+) True hsd17b14
XM_034310053.1 mRNA downstream 104644 2092559 ~ 2114069 (+) False bcat2
XM_034310052.1 mRNA downstream 106462 2094377 ~ 2114069 (+) True bcat2
XM_034310161.1 mRNA downstream 142613 2130528 ~ 2174611 (+) True grna
TU241504 other upstream 48372 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 342775 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 577523 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 697238 1220512 ~ 1236612 (+) False paqr4a
TU240783 other upstream 882711 1046805 ~ 1051139 (+) False armc5
XR_004579364.1 other downstream 167684 2155599 ~ 2155849 (+) True LOC117598829
TU242114 other downstream 1015757 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 1204797 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 1978843 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 1978843 3966758 ~ 3986284 (+) False limd2

Expression Profile