RNA id: XM_034310056.1


Basic Information

Item Value
RNA id XM_034310056.1
length 1315
RNA type mRNA
GC content 0.53
exon number 4
gene id ccndx
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1883052 ~ 1889515 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctctctctctctctctctcctctccaccTGTTGATGCCATTGTTATCCCGATGGCATTGTGCCGTCTCTCTCTTCGTACACGCCTCCTTGTCACCGAGGGTATATAAAGAGagagcttcacacacacttcacttcacacactacacacacacacttcagcgcTGCAGACTCAGCAGAGATGTCCGTCTCTCTCTGGTGCGAGGAGGAGTCGGCGAGATCCGGGACGTCGGTCCGAGCGTCCTTCGACCCCAACGCCTCCGGGCTCAGGGTCATCGAGAGGCTGCTGCACTCTGAGGAGAGATACGCTCCGTCTCCGCTCTACGTCTCCCTCGTTCAGAGAGAACCCAAACGCAGGGAGGAACTCGCCAAGTGGACGCTCGAGGTGTGCTGTGATTGCGGATGTGACGAGGCCGTGTTTCCTCTCGCAGTCTCTCTGCTGGATCGCTACTTAGCCTCCACACTGTCTCTCCCCGTCTCCGCGTCCTGtctcaaattatatttaaaaaaaataaaaatttgGGTTCTCcagagagatacagagtgtAAGATTCAcccagatgagtgtgtgtgtgtgtgagactcatgTATTGTCTTGTCTGGTCTTGAACAGGAAATGGAGCGCGTGGTGTTGGGAACGCTGCGCTGGGACGTGGCCGGCGTCACCCCTCAGGACTTCATCCCTCACTTCCTGTCGTGTTTGGAGGAGCTGATGGGGGACAGCGAGGACGCCGCCGACTTCGTCTCCACGCTCAGACGCCACGGGGACACGCTGGCCGCCATGTGCGTGTGCGACTCTCGCTTCCTGGGAACTCGTCCGTCCCTGGTGGCCGCCGCCGCCCTCAACTCCGCTCTCCGGGGTCTGGAGGCCAAGAGGAGGCGGGAgatgagtcacatgacctgcacGCTGGCTACGCTGTGTCGCAGTGACCCGGCCGTGCTGCAGTGCTACAGCGAGCTGATAGAGGACGCTCTCAGGGAACGACTGAGGAACAGCCGAGAGCAGGAGGAAGACGACGGCGAGAagaatggagggatggaggaggagagatCGAGCACGCCGACTGACCTGAGAGAAATAGActtttaaaacaacacaaacgCACAAAACGCACATCCGCAGTCTTCCTCCTTCATCATCAGTAAAACTGATGTAAACTTCTAAATGCTGCatgataatgtttttaatgattttatttatttaagaattattcttatttatttctttattcgtTCAAGGTGTTCACTTTTGTTGAATTTGTTTATCGTGAGTTAATCTTTTGTTGATAcctgatatttattttttttttatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241499 lncRNA upstream 11492 1856423 ~ 1871560 (+) True G203898
TU241459 lncRNA upstream 16041 1772629 ~ 1867011 (+) False G203867
TU241458 lncRNA upstream 40472 1840338 ~ 1842580 (+) True G203867
TU241477 lncRNA upstream 57759 1824978 ~ 1825293 (+) True G203885
TU241234 lncRNA upstream 316423 1565356 ~ 1566629 (+) True G203672
TU241508 lncRNA downstream 16324 1905839 ~ 1922479 (+) True G203906
TU241496 lncRNA downstream 27690 1917205 ~ 1940770 (+) False ppfia3
TU241516 lncRNA downstream 29508 1919023 ~ 1987215 (+) True G203913
TU241543 lncRNA downstream 118886 2008401 ~ 2008606 (+) True G203935
TU241566 lncRNA downstream 264921 2154436 ~ 2159283 (+) True G203955
XM_034310013.1 mRNA upstream 12882 1854742 ~ 1870170 (+) True tbc1d17
XM_034310014.1 mRNA upstream 12882 1854742 ~ 1870170 (+) False tbc1d17
XM_034310016.1 mRNA upstream 12882 1855589 ~ 1870170 (+) False tbc1d17
XM_034310015.1 mRNA upstream 12882 1855589 ~ 1870170 (+) False tbc1d17
XM_026917152.2 mRNA upstream 43714 1828671 ~ 1839338 (+) True zgc:195001
XM_034310055.1 mRNA downstream 770 1890285 ~ 1903186 (+) True nucb1
XM_034310208.1 mRNA downstream 43959 1933474 ~ 1987915 (+) False ppfia3
XM_034310212.1 mRNA downstream 43959 1933474 ~ 1976884 (+) False ppfia3
XM_034310209.1 mRNA downstream 44245 1933760 ~ 1987915 (+) False ppfia3
XM_034310210.1 mRNA downstream 44335 1933850 ~ 1987915 (+) True ppfia3
TU241220 other upstream 291977 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 526725 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 646440 1220512 ~ 1236612 (+) False paqr4a
TU240783 other upstream 831913 1046805 ~ 1051139 (+) False armc5
TU240808 other upstream 1124994 753275 ~ 758058 (+) False fus
XR_004579364.1 other downstream 266084 2155599 ~ 2155849 (+) True LOC117598829
TU242114 other downstream 1114157 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 1303197 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 2077243 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 2077243 3966758 ~ 3986284 (+) False limd2

Expression Profile