RNA id: XM_026917227.2


Basic Information

Item Value
RNA id XM_026917227.2
length 3682
RNA type mRNA
GC content 0.51
exon number 5
gene id rundc1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2177683 ~ 2186164 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACCGTCGCTGAGTCCGCGAGCGCGCGCGTGGATTCGAGATCTTCGTTTCTTTTGGTCACTACGTCACGCAAAGCTCAGCGAGATGACGTCAGAGCATTCAAGATGGCGGCTGCACCTGCCAGATATGTTGGAACGTAAACATTAGATCGGATTGTATAAAAacgtttaaaaaataaaaacgtttAATCAGGTagtgagatttaaaaataaataagtaagtaagtaagtgagAGCCGGGATGTGGGCGGAGGAGACGGTGGCCTCGGACAGCGAGGCGGCGGTGACCGGCGCCGGTGAGCGCTGGGCTCCGGTGGGCGCCGTCGCTAATCCCGAGGATGAGCGCAGTCAGAGCGCGGAAGGACACGGAGCTCCGGGCGGCGAGGCGGTAATGGCGACGCGGCTGCGGCGGCTGGAGGAGGAGCACGAGCAGCTGCACTCGTCCTTGCTGGCGCTCACGTCGCACTTCGCCCAGGTGCAGTTCCGCCTCAAGCAGATCGTCCACGGCCAGAGCGAGGAGCAGGACAAGGAGAAGAtgctgaaggagctggaggagtTCGCCTTCAGAGGATGTCCTCATGTCCTGGGCTGCCGCGCGCAGCATCCGCTCCAGAACTCGagcgagagggaaaagagagagcgCCTGGAGGCtcagagagaaaagcagaaggaGCTGATTGTCCAGCTGAAGACGCAGTTGGATGATTTGGAGCGTTTCGCCTACCAGGAGGGCAGCTATGACTCACTCCCCCAGTCTGTCGTCATGGAGAGGCAGAGGGTGATCATCGACGAGTTGATTAAGAAGCTGGACGTGAACCTGAACGAGGACATCGGGAACCTGACGCCCGAGGAGCTGCGACAGCGCGTGGACACCGCCATCGCACAGATCGTCAACCCCGTGCGCGTCAAAGAGCAGCTGGTGGAACAGCTCAAAACCCAGATCAGAGATTTGGAGATGTTCATTAACTTCATACAAGATGAAGTGGGGAACCCGCTCCTGTCAGACAGAGGGAACAGCCAGCAGAGTCGAGCCACCGGACCCAAACAGGGCAGAGGACAGGGCAGCATGAAGCAAGTGGACCCTGAGCGTGCTGAGCAGCTGCGTGCCAGCGGGCTGCGTCTGGTCCAGCGTGCTTTAGCGGTGCTGCAGATCTTCGCTCTGAGCCAGCTGGGCTGTTCTGCAGGCACCATGGCCCCGAAGGCGTGGCCTCCAGCCGACGGAGCTCCTGATTACGGCCCCCTGCTGAACAAACTCGAGGGAGCCGTGGAACGCGTACGCCTCCTCGCCTCTCGCCTCCAACCTGCAGGTCAGGACGAGCCCGTGGTGAGCTACACGTCCTCAGTGACGCCCCCAGCTGCCCCTTCAGGACCTCGACACGAGCTCATAGTCACTGTGAGGAAAGATCTGTCCCTGGCGTTGCGTGACCTCCTCGCTCACGGCCTTTACGCTCCATCTGAAGGCATGAGCCTGGTCCTGGCGCCTATTTCCTGCCTCCTGCCGTTCTCCGGATCCTCGCAGCAGGACTCGCTGCACCCCTGGGAGCTCTTCGTTAAGTATTATCGCGCGAAAAACGGCCCGGCTTTTGCCGAATCGCCTGCTCGGCAGCTGTCGCAGTCCTTCAGCCTGCCTATAGGAGGAACCTCGACGGTCGTGACGCCGAAAAACTCGCTCCTGTGGGCCGTGCACAGCGTCCTGAGGGAGCACGGCCGCTACAAACGCAGCGCGGACTCCGAGTTCAAGGCGCTGGTGTGTATGGCGCTGAACGAGCAGAGGCTGGTGTCCTGGGTCAACCTGCTGTGCAAGGCGGGAACTCTGATCCACGCTCACTACCAGCCCTGGAGCTACATGGCGCAGACCGGCTTTGAGGGGGCGCTAAGGATTCTGGGACGTCTCAGCCACCTGAAGTTCGATCTGCCCGTCGATCTGGCAGTGCGACAGCTCAAAAACATCCAGGACGCGTTCTGAGTCCATCTTATTTCAAAGAGGAAGAACATTGCTGAGTCCAAATGTCTGACCTTAAAACCAAGAACCGTCTTTGTTTCATCAGCTtccaaaatgtacttttaatcAATTAACAAagaattaaaggtgcagtttgtaatgtgtTTCGAGACCTGGAAATAATCGCCTCATTTTAAAGACACATTCGAAGTGTCCATGCACAGGGTATTTATCTCACTCGTTTCTTCATTTCGGGCTCAGGGTGAAAATCTTCCGGCCTGgaaataagctccgccccctcagtcagaaacacacctgctcagcacttttttttttccttaaaaggtgACCCATGAGGCATATTGCAGTTTCAGCTGAGTCTGTTTTGAGTAAAATGAGAAATGCTTTTCGGAGGgctgtaaatattacaaactgctcctttaaatctTTTTAGCTAAATCCTTACACGACACTAAATATCCagttcactttatttttttaaaactgttgtgGCAAAAGCTGTAAACTGGTTCTTTTTGGGCCTGGGTGTATATTTGTGGTCCACTGATTTCACTAATGCTTCAGTAAAAATTCCTcctttctgattaaaaaaattacgtAACCTTCAAACATTTCATAAAAGGTTTCAGTAAGTATCAGGAGTGCCTTTAATATTATACAGATACATTTCACTCTGTGTGCAATAGAGCGGTGGACCCAAGTACATAACTGTCCTGTAAACATCATGTGCTCCGCTTTTTAATCTTCCGTAACGGCTGCGGTTTGTGCTGCTGTCGTTTATTCTGTGGCTAGCGAACCGCCTTCGTGCTAATCCTTTCATATACGCTGTGTGTTACATGATGTACGCAGATACACATGTGGGTAGTTCTAGGTTTATATTAGCAAGGGATGAGTAACGTgtgtcgcttgtagtttgtctctcgTGGGCGTGTACCAACCGTGACTGCTTTTAgcctgtgggcgtggcctatccAGTGGCCTgctgcttccttccttcctgctttatttttattcgtaatgtctctatacacgtTTAATGACAGGACGAGATGAAACCGATGTTATTTTTTTGCGTGACAAACAGTAAacgggaactaattgcaggtaggaactaaagttgtgaacagggaactgaagaaatgtcggaCGACACGCGCCGCACGATTGATCCGAGGAATCATTCCAGCCAGTCGTTTGAAATTGTCACTTTACTGCATCgtgcctaatttgcatagaatttaaaaatacaattgtCGCCCTGTCACTGAGATCGTGGCTCCGTGTCACAGACGTACGTACGCTCTGACTTGCACTCGCGTGAACCTAGTGCACATCTTCAGCTGCACCGACAAAAGAAACGAAAGAACGTTTTAAATATCTTCTGATTCTGTGAGAAAAAGGAACTGGGACGTTTCCCAAAACTCTGACGTCGTAGAGTGTGGAATAGACGCGCTTGTTTAAGTCATGCAAGTGCGTTAGACTGAACATTTCAGAGTGAAGAATCTCTCagtgcactctttttttttttatttatttttttaagcatgttCAGTTGTTGAACAACTGCTGGTGTCGAGCAGGCGTGTCACTTCCTGAACGTCTCCTATTGGACGCTGTTTAAAGCTTACTAAGGGAAATGCGTTAGCATTAGAAGTTGGTATTAAAACATTCCACTGCATCGATCGTATTTTGCTGGTAACGTATTCTGCGTTCACACCAGC

Function

GO: NA

KEGG:

id description
K24786 RUNDC1; RUN domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241566 lncRNA upstream 18400 2154436 ~ 2159283 (+) True G203955
TU241543 lncRNA upstream 169077 2008401 ~ 2008606 (+) True G203935
TU241516 lncRNA upstream 190468 1919023 ~ 1987215 (+) True G203913
TU241496 lncRNA upstream 236913 1917205 ~ 1940770 (+) False ppfia3
TU241508 lncRNA upstream 255204 1905839 ~ 1922479 (+) True G203906
TU241577 lncRNA downstream 13523 2198113 ~ 2198333 (+) True G203965
TU241588 lncRNA downstream 39959 2224549 ~ 2227164 (+) True G203973
TU241581 lncRNA downstream 73892 2258482 ~ 2260374 (+) True G203967
TU241612 lncRNA downstream 204394 2388984 ~ 2392499 (+) True G203996
XR_004579376.1 lncRNA downstream 339398 2523988 ~ 2524878 (+) True LOC117598836
XM_034310161.1 mRNA upstream 3072 2130528 ~ 2174611 (+) True grna
XM_034310053.1 mRNA upstream 63614 2092559 ~ 2114069 (+) False bcat2
XM_034310052.1 mRNA upstream 63614 2094377 ~ 2114069 (+) True bcat2
XM_026916139.2 mRNA upstream 86230 2084552 ~ 2091453 (+) True hsd17b14
XM_034310160.1 mRNA upstream 116613 2012233 ~ 2061070 (+) True slc1a9
XM_026917270.2 mRNA downstream 2775 2187365 ~ 2195026 (+) True rpl27
XM_026917021.2 mRNA downstream 14159 2198749 ~ 2212411 (+) True slc25a39
XM_034309962.1 mRNA downstream 55019 2239609 ~ 2258256 (+) True nbr1b
XM_034309964.1 mRNA downstream 55019 2239609 ~ 2258256 (+) False nbr1b
XM_034309963.1 mRNA downstream 55020 2239610 ~ 2258256 (+) False nbr1b
XR_004579364.1 other upstream 21834 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 292205 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 586608 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 821356 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 941071 1220512 ~ 1236612 (+) False paqr4a
TU242114 other downstream 819082 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 1008122 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 1782168 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 1782168 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 1782168 3966758 ~ 3986284 (+) False limd2

Expression Profile