RNA id: TU241612


Basic Information

Item Value
RNA id TU241612
length 2135
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G203996
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2388984 ~ 2392499 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCAagcaagaaaacacacagagaaacacagaaaaacagaacaccTCGACCAAGAAAAGAACCGAGCCGGAgttggagctggagctggagctgaagCTGGAACCCGAACAGAGCTGGAACAGCAAGAGAACCTGCCTCAGAAGGTCCCAAGGCTGGCAACCTCGAACTTCGCCTGAATTAAGTTTTCTCCCAGCCGTTCAGACTCCAGCCTCCCTCTCCGGCGACGATCCATAACTCCTCTAACATCCTCCAACTCCGATCCGACTAGAACCTGCTGACCGACACCAACTCCTTCCACTCATCACCCAAGCAAACATGGCGAAGAGACTCATCACGCATCTGTTCCAAAGGGAAGTCCCCAGGTGGAATCCCCACGGATGTGGGTGGGGGGTGAAGCCCTCTTTCTTCTCAGAGTCATCATGACATGGCACAGACATTGACGGGCCAGGCCCTGCCTGCCTGCCAGAGCTGCCCACATCCCACTCCTAACAACGCAGCAGCAGGACCCATCCTCCCtcatgatttttacattttcctaaACCCCAGCCAATTTGTCCCCAAAATAAATGTGGCTGGTATTTCTTAATACTGGGCCACGCACACCTCACCTTTCCCATTGCCTCACCTTCAGTGGACTGAGGTctgattacattacatttatgccATTTTGTAGACACCCTTATCTAGAGactttatctcattttatagaactgagcagttgagggatGGCATAcaagctcatgcatgcagaataGGGCAGAGAGTGCTATGGGAGACAACATATATGGGAGTCCACCAAGTGTAAGGTGGTCAAAAAAGTGCAgatgattgatttttttaaaaaaaatcatacacacatgcaaagaGAAACTTTACATACCAACCAAGGTCAAACATTCATGTGATGAACTCAATTTACAATTGGTTAAAATAATagtcatttctgtatttttatcacaaataaatatttgcaaAGTAATTTGTATCAAACTCTTCAGTTTAACTTCAtaatctccaaaaaaaaaatctgatattcATAAGACTGAATATATGTTGCAGGAAGGTaagagaataaataaagtaaattggTAAAATACACTCAAAATTCGATGTTATTcacaaaatatgaaaagcaaCAGAAACccaactaaaaaataaataacaatgttaagaaaaaaaatagacaaaatgagTTTAACAACTgaaaaattatgacattttaaatctaaatctaatctcAAAATGTCAATAGACTCTACATGAATGTTTTGGAAGTTTAGGAGTggtatttgtccatatagtacacaataatagaatggatttatttataattgcactatccgttgtgcccagatgaggatgggttcccttttgagcctggttcctctcaaggtttcttcctcatatcatctcagggagtttttccttgccaccgtcgccctctggcttgctcattagggataaattcacaggaataaattcacatatttactatatatctttttttgtgaatcgatttatttctgtaaagctgctttgtgacaatgtccattgttaaaagcgctatacaaataaaattgaattgaattgatataAGAATGAAAATCTAAATTTCAGGTGACCCTatcattattttctcatttctgcaTTTGTCATCAGTTTATGGAAAATAGTGATGTAGAATTTAAATCTTGATGCATTTCAATATTTAaggcaaaaatacaaaatgaaaaagtagGAAATTGTATTGAATCCCTAAACCATTTTAATGTCAAGTAGCAGTGAGATAAACGGGTAACAATAAACTagtaagaaaatgaaaataaaagttttgATATAGTAACATCTAAACAGActaaacagatgaaaacaaaCTGATTCTAAAATCTGTGTTATTTAAAACAactagaaaataataatatcttaaCAATGGAAGATTATCCAAATTAACCATGTTATTATTTGTGGACTGTAGATATTGGATAATTGTTTAGTTCTCAGCACTACTCTTCACAGTTTGCATAAATTTCTGCATCCTCATTGTCATTGTCCACATCACTTCTTTGTTCATGAGCATTGAAATCAGTTTGGTCGTTTTCAGAGTTGTCTGAATCGTCCTTCTGGGGGAAAatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241581 lncRNA upstream 128610 2258482 ~ 2260374 (+) True G203967
TU241588 lncRNA upstream 161820 2224549 ~ 2227164 (+) True G203973
TU241577 lncRNA upstream 190651 2198113 ~ 2198333 (+) True G203965
TU241570 lncRNA upstream 202820 2183237 ~ 2186164 (+) False rundc1
TU241566 lncRNA upstream 229701 2154436 ~ 2159283 (+) True G203955
XR_004579376.1 lncRNA downstream 131489 2523988 ~ 2524878 (+) True LOC117598836
TU241988 lncRNA downstream 148615 2541114 ~ 2541458 (+) True G204316
TU241996 lncRNA downstream 152490 2544989 ~ 2736830 (+) False G204323
TU241998 lncRNA downstream 152490 2544989 ~ 2737286 (+) True G204323
TU242020 lncRNA downstream 226528 2619027 ~ 2627149 (+) True G204330
XM_034309962.1 mRNA upstream 130728 2239609 ~ 2258256 (+) True nbr1b
XM_034309964.1 mRNA upstream 130728 2239609 ~ 2258256 (+) False nbr1b
XM_034309963.1 mRNA upstream 130728 2239610 ~ 2258256 (+) False nbr1b
XM_026917021.2 mRNA upstream 176573 2198749 ~ 2212411 (+) True slc25a39
XM_026917270.2 mRNA upstream 193958 2187365 ~ 2195026 (+) True rpl27
XM_034310177.1 mRNA downstream 229671 2622170 ~ 2691714 (+) True LOC117598986
XM_026916953.2 mRNA downstream 462897 2855396 ~ 2856253 (+) True hspb9
XM_034309777.1 mRNA downstream 475269 2867768 ~ 2908043 (+) True LOC113528221
XM_034310178.1 mRNA downstream 515673 2908172 ~ 2917545 (+) True LOC117598987
XM_034309769.1 mRNA downstream 521759 2914258 ~ 2983091 (+) True LOC117598765
XR_004579364.1 other upstream 233135 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 503506 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 797909 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 1032657 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 1152372 1220512 ~ 1236612 (+) False paqr4a
TU242114 other downstream 611173 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 800213 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 1574259 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 1574259 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 1574259 3966758 ~ 3986284 (+) False limd2

Expression Profile