RNA id: TU241714


Basic Information

Item Value
RNA id TU241714
length 203
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G204084
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1735518 ~ 1735720 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGGAGTAAATCATCAGCGGAAAACGAGGAGCTCAGGAATCGGCAGTGGAGGGAAAAGTTTAGCATAAAATCGATCATTCcagttaaatttaatttcatattgacGAATCTTTACTGCAACTTCACGCTTGGCCTTTTTAACGCTCACTGAATTTGTGTGTGCGGTTTTTTTATGCACTGAGATAATAGCAAGTGAATTTGC

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241710 lncRNA downstream 4318 1731001 ~ 1731200 (-) True G204080
XR_004579328.1 lncRNA downstream 16727 1718013 ~ 1718791 (-) True LOC117598750
XR_004579429.1 lncRNA downstream 207285 1525663 ~ 1528233 (-) True LOC117599001
TU241338 lncRNA downstream 208377 1507201 ~ 1527141 (-) True G203756
TU241307 lncRNA downstream 234703 1499020 ~ 1500815 (-) True G203733
TU241717 lncRNA upstream 14462 1750182 ~ 1750391 (-) True G204087
TU241720 lncRNA upstream 30931 1766651 ~ 1766869 (-) True G204090
TU241691 lncRNA upstream 102868 1838588 ~ 1893122 (-) True G204062
TU241689 lncRNA upstream 120703 1856423 ~ 1871551 (-) True G204060
TU241748 lncRNA upstream 131572 1867292 ~ 1867937 (-) True G204107
XM_026916145.2 mRNA downstream 419343 1309888 ~ 1316175 (-) True LOC113527946
XM_034309793.1 mRNA downstream 429155 1302401 ~ 1306363 (-) True LOC113528189
XM_034309758.1 mRNA downstream 441279 1282400 ~ 1294239 (-) True LOC113525779
XM_034309759.1 mRNA downstream 455966 1268382 ~ 1279552 (-) True LOC113528234
XM_034310229.1 mRNA upstream 31586 1767306 ~ 1812044 (-) False mybpc2a
XM_034310228.1 mRNA upstream 31586 1767306 ~ 1812044 (-) False mybpc2a
XM_034310227.1 mRNA upstream 31586 1767306 ~ 1812044 (-) True mybpc2a
XM_034310020.1 mRNA upstream 106269 1841989 ~ 1859709 (-) False akt1s1
XM_034310018.1 mRNA upstream 106269 1841989 ~ 1850490 (-) False akt1s1
XR_003402974.1 other downstream 235913 1499515 ~ 1499605 (-) True LOC113528659
XR_003402975.1 other downstream 236168 1499261 ~ 1499350 (-) True LOC113528660
TU241260 other downstream 390347 1265662 ~ 1345171 (-) False G203695
TU241084 other downstream 688963 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241063 other downstream 824290 910117 ~ 911228 (-) True G203544
XR_004579451.1 other upstream 267814 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other upstream 267814 2003534 ~ 2007787 (-) False LOC113527889
XR_004579338.1 other upstream 863989 2599709 ~ 2600352 (-) True LOC117598767
XR_003402970.1 other upstream 1419576 3155296 ~ 3155430 (-) True LOC113528655
XR_003402972.1 other upstream 1420897 3156617 ~ 3156709 (-) True LOC113528657

Expression Profile