RNA id: TU241735


Basic Information

Item Value
RNA id TU241735
length 2030
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G204095
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1868498 ~ 1905038 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTATtaccattaaaataataaacagaaaccaCATAAATCCTGTTCTGTCTGctcacagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgtatgtgcaTGCTGGCATGAGTGTTTAAGAATCAAATAACTGAGcagtacagaaacattttaaagcgAAATGTGCAACAGGTGGAAACTAGCTAAAAAGTAACGTAAGTCTGAGTCACGCAAAATCCATAAATAACGTACAAAAACCTAAATAACGCTGTTACGCTCCTTAatctctttatttcatttaatttctttgtaaaataGCAGTGTTAGTGTTTATAGTGGAATTttgatcatcatcatccactTCCACCTGTATTATACAATCCACCtttaggaggtgtggcctagcAATTTAGGGGCGGAGTCAATTCAAATTGCACTGAGGAATAACGCTGCGTTCGGCTGAAGGTCGTAACTCATCATTTCTGACCTCCgattaagaaaaacaaaaataaacgcCCCCACAGCGAGTGACGTCAGaacaacatggccgctcacagcttGTTAAATCTCTAACGCGAACTCTACAGATCGCTGTTTTGAGAAGATAAATATACGTCACTTATCACACGTCGCTGAGTCGCTTGACGCAAACAAAAGATGATTCCAATGATGTTGTccgtttcttttttaaaaatgacataactCCCACTTCCGAGGTAAATCAAGTACAGCATAACGTAATTCTGAatgtccaagatggccgccgctATGAATAACGCTCCAGCGCGACGTCACTAAAGAACAGGGTGAAGACTTCTTTTAACCTGTTcgcttgttagcaacattagtcttgtagctccagtgcaaaatgaAACACGATACACACATTTCAGCCAAACGACTGCATCTGAAGTAAAAGTTTTTCACCAAACTTTTCAcgatttcttaaaaaaaaggaaagcaaatTTCATCCCTGTGAGAAGAGACTGCGGAAAACTTGAGATATTTTCTAAAAGTTTACACACTATTCAAGTTAAActtcaccctgaaacacattaaatatgtttacattcaaatatttttgaCGTGTTTAGCGATTCTTGTGCTAATTTTTATTTTCGCAGTTACACTGGAGTGTAATCAACGATGAAAGCGATCCGGTTTTGCTCTTAGCGcctaaaaacaaaatcttttcTCGCTCCCTTTTCATTTTCCAGCATCGTTCAAGGTcgtattaatgagaaatctagCGTAGATGTCGTAGACACGTCGGCGCAAAAACACGTCCGGCATCAGACGTGTCCCAGAATACACTGCAGCAGTACGACGGCGagagactcggctcggctagttagagATCTACGATACGATGAGTGTTAGCGTGAAAGTTGAACTTtcggaagctgatctgtttgaggaGAGTGTGagcactaaagcgccgctgcatttCGGTAGAAAAGAACATGAAGAAAGGGTTAAATCCCGCTGCAGCGCTATCAGCAGGCAGTCGGACggtattgtgggtaatgtaggaagcCGTTaggaatttcattacaaaataaatcttggatgtcGTTAAAGATCACGTGATAATTACGcagattaatatgcaaatgattcAGGAAGAGTTTTCCTTTGATCAAGCGAGattaaaaaccaaaaaccaaaCCATACAATAAAAGTCGGCTGTAATTAAAGGTTACGATGAGGAGTGTTTAGCAGCAGcgtatacatatgtgtgtgtgtgtgtgtgtgtgtgtttttttcagagTTTTGTCACCTGCTTATATTTAGTGGTTCTCTCAAAGAAACACTTTCACTCAAATATCTATGTTCACtgtatccgtgtgtgtgtgtgtgtgtgttgaggcaGTCCATTCAGAAGAATATGAGGAGTCtgaccggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacgtgAGGTGagctgttactgtgtgtgttgaggAAGGTTCTGTGGCGGCTCAGCAGGCGGGCCGTTCTGGACGTCTCCGTTCTGATCGATAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241760 lncRNA downstream 4221 1894069 ~ 1898760 (-) True G204117
TU241691 lncRNA downstream 9859 1838588 ~ 1893122 (-) True G204062
TU241689 lncRNA downstream 31430 1856423 ~ 1871551 (-) True G204060
XR_004579386.1 lncRNA downstream 32196 1870212 ~ 1870785 (-) False LOC117598839
XR_004579385.1 lncRNA downstream 32296 1870124 ~ 1870685 (-) True LOC117598839
TU241790 lncRNA upstream 36311 1941349 ~ 1941880 (-) True G204145
TU241829 lncRNA upstream 160850 2065888 ~ 2077421 (-) False LOC113528455
TU241838 lncRNA upstream 207407 2112445 ~ 2114826 (-) False ifi35
TU241831 lncRNA upstream 282235 2187273 ~ 2189704 (-) False ifi35
TU241832 lncRNA upstream 282235 2187273 ~ 2195540 (-) False ifi35
XM_034310020.1 mRNA downstream 43272 1841989 ~ 1859709 (-) False akt1s1
XM_034310018.1 mRNA downstream 52491 1841989 ~ 1850490 (-) False akt1s1
XM_034310017.1 mRNA downstream 52491 1841989 ~ 1850490 (-) True akt1s1
XM_034310229.1 mRNA downstream 90937 1767306 ~ 1812044 (-) False mybpc2a
XM_034310228.1 mRNA downstream 90937 1767306 ~ 1812044 (-) False mybpc2a
XM_034310295.1 mRNA upstream 86135 1991173 ~ 2013251 (-) False LOC113527889
XM_034310296.1 mRNA upstream 86135 1991173 ~ 2012490 (-) False LOC113527889
XM_034310294.1 mRNA upstream 86135 1991173 ~ 2012461 (-) False LOC113527889
XM_026916040.2 mRNA upstream 86135 1991173 ~ 2007775 (-) True LOC113527889
XM_026917008.2 mRNA upstream 161139 2066177 ~ 2077477 (-) True LOC113528455
XR_003402974.1 other downstream 403376 1499515 ~ 1499605 (-) True LOC113528659
XR_003402975.1 other downstream 403631 1499261 ~ 1499350 (-) True LOC113528660
TU241260 other downstream 557810 1265662 ~ 1345171 (-) False G203695
TU241084 other downstream 856426 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241063 other downstream 991753 910117 ~ 911228 (-) True G203544
XR_004579451.1 other upstream 98496 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other upstream 98496 2003534 ~ 2007787 (-) False LOC113527889
XR_004579338.1 other upstream 694671 2599709 ~ 2600352 (-) True LOC117598767
XR_003402970.1 other upstream 1250258 3155296 ~ 3155430 (-) True LOC113528655
XR_003402972.1 other upstream 1251579 3156617 ~ 3156709 (-) True LOC113528657

Expression Profile