RNA id: TU241924


Basic Information

Item Value
RNA id TU241924
length 1851
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G204264
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2258504 ~ 2260374 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agcaggtgtgtgttacATAAAGAACAGCATGAGTTGATTCACGGCGCTGCTTTCCACTCGTCACGGTGCAAGCAGAAAACTTTtccactttaataaataaacgaaGCACATGGTCCACAtctttttggtcattttttcatttctaatgACTCCTAAAAGCACCAGAGAGAGGTGCAGAATCAGTGGAAGAAATTAGGGGATGTCttcgcagaaaaaaaaaaggaaacttcTAATAATTAGAGTAAGTTAaacttgtaaatataaatgtacactTTGTGTACTTACAGACcatgaaagtaaaagtatttACACCCATTCTGACAAGCATGAGATTCTCCAATACGTCAGGAAGTCGGAAATAATTCACACAGCATTAACGTGGAACGCTTTTTGGATTCGGATCGAGCTACAGAAAATTCCCTTAAGGTGCGTTTAGATTGTACGTTATCAAGTACAAGGGAAATTGAATTATCAAAATATAGATCATTTCCACAaggctttttttgtttggtttttttttttgcttcttcacTACAAGCATTTCTACAATGTTTAACATCACGTGTAGATATTTTATGATTGCCACTCAAGTTGTTAATCATTTTccttatatattaattatataatgcGAAATGGTTCACAGCATGATACAGTACTTATCATTCCTTAGTTTTAAGATCAACCATAGAATTTTTAaagcaacacattttaaattacacactgcagatgccacatcatcatcatcatcattattatccgAATTCGTTTTAAGACTATAATAAGTTCTGATTGAGGATCAGCAAACACAGCCGATCTTcaagtgcattttttaaatccatgaacaacaacaacaacaaaaatcagggatgcatcgataccaATACTCATTTACTGAGCTCTAAAAGTTGTAAAAAATGCTCTCATACAGCGTGACTAATAAACGGATTAAGCTtaatgacagcgatctggacgTATTTTACAATTAATAATCAAAGTAAAGCAAACTCCTCGTCAAAAcatcaagaggaggaactacagcgtCTTCCTACGAGGAGTTCATCACTAGCAGTGAACCCTGGCTATGTGAGGAAAAAacgaaaattaaaataaaaaatattcaaaaaaaaaaaaaagaattctgacAGAATGAAGACACAAAGCTGCTATTTTCTGCAATCCTACTCGATCCAGgctaactaatgtagctagctaaagcaCTTCATTTGATATGAAAATCAACTCACGGACATTATAAAGAACGACTCTAGTAGCCTaagtgcataaacacacacatgtacactcaTGATGGACTCTACTGAAACCAGGGAAACAGAAACGGAGCTAAATAAGCTGATTCCATGACGTCcgtgattgattaatactaagtgTTTATTTCCGTATCAGTACTGATGAAtaccaaaaaacatgcactcctgctgaaaaaaatggtATCGCTGCATcccaaaaaaaagtttagtacATTCCTCAACTTAAAAGTCATGCAGATTTCACCGTCACGTGGCGAAGTCCGCGCCCTTCGATAAAGTTAAAGCCACATTTCACACCCAGCCCTTCTATTGCACATCGAActccatgttctctctctctctctctctctctctcagagaatAAAACCCACACACTTCAGACGCAAAAAGCTACAAGCAGGAACACTACAACTATTTATAAATAACCTAAAAGTCAGTAGTAACACATGTAACAATTCAGCATTTTCTCTGTGAAACGTTTCACTTTCAGCCGGTTTCATGCATTGTCATGATTATATcactttttttgcattatggTTTCCTTCTAATAAATTAACTACAGTTACGGACTGGCAAAAGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241846 lncRNA downstream 43906 2213117 ~ 2214598 (-) True G204191
TU241841 lncRNA downstream 46061 2210785 ~ 2212443 (-) True G204187
TU241893 lncRNA downstream 52383 2205778 ~ 2206121 (-) True G204234
TU241832 lncRNA downstream 62964 2187273 ~ 2195540 (-) False ifi35
TU241831 lncRNA downstream 68800 2187273 ~ 2189704 (-) False ifi35
TU241929 lncRNA upstream 4469 2264843 ~ 2265213 (-) True G204269
TU241937 lncRNA upstream 64512 2324886 ~ 2379453 (-) True G204275
TU241938 lncRNA upstream 71302 2331676 ~ 2342773 (-) False LOC113528223
XR_004579375.1 lncRNA upstream 153945 2414319 ~ 2415310 (-) False LOC117598835
TU241959 lncRNA upstream 154093 2414467 ~ 2415527 (-) True LOC117598835
XM_034309965.1 mRNA downstream 25209 2225611 ~ 2233295 (-) True aoc2
XM_026917082.2 mRNA downstream 134668 2114102 ~ 2123836 (-) True ifi35
XM_026917008.2 mRNA downstream 181027 2066177 ~ 2077477 (-) True LOC113528455
XM_034310296.1 mRNA downstream 246014 1991173 ~ 2012490 (-) False LOC113527889
XM_034310005.1 mRNA upstream 9297 2269671 ~ 2283303 (-) True LOC113528224
XM_034310165.1 mRNA upstream 29043 2289417 ~ 2304449 (-) True LOC117598982
XM_026916342.2 mRNA upstream 44902 2305276 ~ 2323646 (-) True LOC113528064
XM_034310168.1 mRNA upstream 78503 2338877 ~ 2344912 (-) True LOC113528223
XM_034310169.1 mRNA upstream 102750 2363124 ~ 2375676 (-) True LOC113528065
XR_004579451.1 other downstream 250716 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other downstream 250717 2003534 ~ 2007787 (-) False LOC113527889
XR_003402974.1 other downstream 758899 1499515 ~ 1499605 (-) True LOC113528659
XR_003402975.1 other downstream 759154 1499261 ~ 1499350 (-) True LOC113528660
TU241260 other downstream 913333 1265662 ~ 1345171 (-) False G203695
XR_004579338.1 other upstream 339335 2599709 ~ 2600352 (-) True LOC117598767
XR_003402970.1 other upstream 894922 3155296 ~ 3155430 (-) True LOC113528655
XR_003402972.1 other upstream 896243 3156617 ~ 3156709 (-) True LOC113528657
XR_004579380.1 other upstream 1122457 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other upstream 1139371 3399745 ~ 3413767 (-) False nde1

Expression Profile