RNA id: TU242111


Basic Information

Item Value
RNA id TU242111
length 1803
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G204410
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3034271 ~ 3036163 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGGATtgggtgtgtgtatggaaaGTTCTGCTGAGGTTTTTCTGCGACAGAAACGCACATTATCCAGTTGAGTTAAATACAATGccatcctttatttatttattgatccACATGCTGTTACTTATTTCAGTGCTAGATAAAGTAAATCAAAAaggaatgggaaaaaaaatcacagttgcACCATTTCCTCCTTAGTACAGAGCCAGTGAATtgacatggtggttatttttaatatggtGTGACCACAAATGAATGTATTGAGGCAGAGAATTAATATATTGAGGCCACAAGATAGTATATTCAGGCCATGAGATAATAAACTGAGATCATGAGATCTTCAGAACCTATTCAGACCATTagagaatatataaataatgtcaggaGATGAGCTTAGgccatgaatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgagaTGATAAATAGATAACAGAGCAAGGCCATAAGGCAATGTATTGAGGCCacaaaagaatatatatttagGCCACAAGATAAGCATCTTATGGCCACGAGTTAATGTATAAAGGCAACAAAATTATATACTGAAGCCAGAAGATAATGTAGTGAGGACACAAGATAAAATAGGAGGCCATGAGATAGTATATTGAGACCATGAGATGATGCATTGATGTCACAAGATAATGTAGTCAGGACACGAGATAGCACGTTGAGACCACAAGATAATGTAGAGAGGACACGAGTAATATATTGAGGCCACAAGATAATAAATCGAGGTCATGAGATAACATATTGAGGCTACAAGTTAAGCATCTTATGCCCATGAGTTAATATATTAAGGCCATGAGTTAAGTTTCTCGAGATCTATACTTTGCTATCTTGTGGTCATAACATAATAATTTGTAGCCTTAGTTTACTTCATACTTAGTCTTTGGCCTCGAAATATTAACCTGTGTCTtcaatatattcatttatattaaaaaataaccactaTGTCACCTATCTCCCCcaaaataatttccataaaTGTCTGCCCCAAACCGTTTGGTTGGTGTAGAAGACCTCTATAAGCAGGAACATCTATAACCATAATATTATGGTGGCCACCATCTTGTACAACCTGAATCAAACATTTTGCCCTCCCCCAGCTCCCGCCTCTCACAGTTTGAAGGTGGAATTATAGCAGGAAGCTGGAAGTGATGCAGGCGATATTATAGTTCTACTTTGAACTAAATGTGTGAAAACATAAGCCTCATAGATTAAATACAGAATGTCTTGGTTAAGTGAATAAATTTGgttacatttcttttctttctttcctttaatTCCTAACTTATAACATTCCCTTAATACTTGAGCTGGGAGTTGTGCTCTTTCATTTACAAGTGCTGTAATTGTTGaataacttaaaaaataaaatctccaGGATGTTAAAATCTACAGGAAGTCATCACATTTTTTTGACCATTATTTACATCTGCTGCTCATCTACAAAactaagaaaatatatttacacatattaCAAATATGTACACTATTTCAATTCCCAAGTAGAAAAATAGCAGCTATGGCTTTTAATCTCCATGATTTGTTCATCGGTGTGTTGGAAGGAAGGacattttcagctttctgttgcACAGTTACAGTCCTTCACTTTGCACTGTTCTCTTACTCTGACACTGATGGACAGGATGGAGTTATGTCACCTGAGTTGGAAGAGAACGTAGGACTGAAGGATTCTGTATATGAAGGAGGAGGATCACAACAGTAGTCAGGCTTCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242013 lncRNA upstream 131376 2902229 ~ 2902895 (+) False LOC113528221
TU242059 lncRNA upstream 262961 2770686 ~ 2771310 (+) True G204362
TU241998 lncRNA upstream 296985 2544989 ~ 2737286 (+) True G204323
TU242118 lncRNA downstream 28742 3064905 ~ 3072726 (+) True G204417
XR_003402893.2 lncRNA downstream 156541 3192704 ~ 3200055 (+) True LOC113527909
TU242361 lncRNA downstream 179624 3215787 ~ 3218884 (+) True G204633
TU242421 lncRNA downstream 317135 3353298 ~ 3356906 (+) True G204678
TU242422 lncRNA downstream 363606 3399769 ~ 3403347 (+) True G204679
XM_026916120.2 mRNA upstream 3107 3014983 ~ 3031164 (+) True mpp2a
XM_026916895.2 mRNA upstream 21412 3003608 ~ 3012859 (+) True pyya
XM_034309769.1 mRNA upstream 51180 2914258 ~ 2983091 (+) True LOC117598765
XM_034309773.1 mRNA upstream 51180 2914258 ~ 2983091 (+) False LOC117598765
XM_034309771.1 mRNA upstream 51180 2914258 ~ 2983091 (+) False LOC117598765
XM_026916304.2 mRNA downstream 52199 3088362 ~ 3146182 (+) True LOC113528048
XM_034309925.1 mRNA downstream 123770 3159933 ~ 3174285 (+) True kat7a
XM_034309926.1 mRNA downstream 123770 3159933 ~ 3174285 (+) False kat7a
XM_034310180.1 mRNA downstream 141386 3177549 ~ 3182903 (+) True zgc:113090
XM_026917273.2 mRNA downstream 185110 3221273 ~ 3231214 (+) False zgc:153733
TU242114 other upstream 21412 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 878422 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1148793 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 1443196 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 1677944 1353334 ~ 1356327 (+) False kmt5c
TU242330 other downstream 156549 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 930595 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 930595 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 930595 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 930595 3966758 ~ 3986284 (+) False limd2

Expression Profile