RNA id: XM_026916895.2


Basic Information

Item Value
RNA id XM_026916895.2
length 695
RNA type mRNA
GC content 0.51
exon number 4
gene id pyya
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3003608 ~ 3012859 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAACCCCGACCAGCGACTGCGCGTATAAAAAGCGCACGTGAAGCAGTCCACACACAACAGCGATCAGCGCGCGCCACTTCTGAGCTCGAGGACTTCGGCTTCAATTAAAACTCAATCAGAGCCTTGATCTCAAACCTACAGCTTCATCTCAACACCAACAATGAGTGTCGTATTGAAGTCGTGGACCGTCGTGTTCTCCCTGCTCCTGTGCGTTCTCCTGTATCTCAGCACCATGGTGGACGCCTATCCGCCCAAACCGGAGAATCCCGGAGAGGATGCGGCGCCCGAGGAGCTCGCCAAATACTACACGGCTCTCAGACATTACATCAACCTCATCACCCGGCAAAGgtatgGGAAGAGGTCGACTCAGGAGGGAAGTCTGGCAGACTTGCTGTTCGGAGACAGCAATGAGCACAACCAGCGATcaagGTATGACGAGTCGTACATGTGGTGATGCTCTCTGCTGCCCCCTGTTGGACTTTTGTGCCTCCCACTCCAGACCCTGTACCCTGCCCCTGTCCAGCCATCGGTCTTCTCCTTCcacatttctctcattttcatcCAACTGTACATAATTTATTACTAGACAGAGAAACCATGTCTCTGGAAACATCACTGTGTCTTACGGAGGATTTATTGTTGCTGTTTGTACATATTAATGACTGTGATTAAAGGTTTACATGATGATACGTGA

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0031843 type 2 neuropeptide Y receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05232 NPY; neuropeptide Y

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242013 lncRNA upstream 100713 2902229 ~ 2902895 (+) False LOC113528221
TU242059 lncRNA upstream 232298 2770686 ~ 2771310 (+) True G204362
TU242026 lncRNA upstream 279799 2656576 ~ 2723809 (+) True G204333
TU242025 lncRNA upstream 279799 2656924 ~ 2723809 (+) False G204333
TU242020 lncRNA upstream 376459 2619027 ~ 2627149 (+) True G204330
TU242111 lncRNA downstream 21412 3034271 ~ 3036163 (+) True G204410
TU242118 lncRNA downstream 52046 3064905 ~ 3072726 (+) True G204417
XR_003402893.2 lncRNA downstream 179845 3192704 ~ 3200055 (+) True LOC113527909
TU242361 lncRNA downstream 202928 3215787 ~ 3218884 (+) True G204633
TU242421 lncRNA downstream 340439 3353298 ~ 3356906 (+) True G204678
XM_034309769.1 mRNA upstream 20517 2914258 ~ 2983091 (+) True LOC117598765
XM_034309773.1 mRNA upstream 20517 2914258 ~ 2983091 (+) False LOC117598765
XM_034309771.1 mRNA upstream 20517 2914258 ~ 2983091 (+) False LOC117598765
XM_034309770.1 mRNA upstream 20517 2914258 ~ 2983091 (+) False LOC117598765
XM_034309772.1 mRNA upstream 20517 2914258 ~ 2983091 (+) False LOC117598765
XM_026916120.2 mRNA downstream 2124 3014983 ~ 3031164 (+) True mpp2a
XM_026916304.2 mRNA downstream 75503 3088362 ~ 3146182 (+) True LOC113528048
XM_034309925.1 mRNA downstream 147074 3159933 ~ 3174285 (+) True kat7a
XM_034309926.1 mRNA downstream 147074 3159933 ~ 3174285 (+) False kat7a
XM_034310180.1 mRNA downstream 164690 3177549 ~ 3182903 (+) True zgc:113090
XR_004579364.1 other upstream 847759 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1118130 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 1412533 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 1647281 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 1766996 1220512 ~ 1236612 (+) False paqr4a
TU242330 other downstream 179853 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 953899 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 953899 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 953899 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 953899 3966758 ~ 3986284 (+) False limd2

Expression Profile