RNA id: XM_034310182.1


Basic Information

Item Value
RNA id XM_034310182.1
length 1001
RNA type mRNA
GC content 0.55
exon number 3
gene id si:dkey-283b1.7
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3073977 ~ 3078018 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atagatagacagatagatagatagatagatagtgttTTACAGTAGTGGAAAACTTCTTCAAATATTAGATGAGGGGAAAAACAGAGTTTACAGTTTCCTGCGCTGCGCATGTGGTCACatggagagaacacacacacacacacacacacacacacacacgcacacacacacacccctcgcGCCCCTGTGCTCGGGAAGCGCGCGTGCGGAGCGGCCGGTCAGTGAGTGTGAGTGGTGAAACCATGCGCTCTCTCGCGCTGTGTCTGTCGCTCGCGCTCCTGTGCGCTTTTCTCCGCTGCACCGCCTCCGagttctcctcctcctccaaatcCGACCTGGAGTACGAGTTCGGGGATTACCGGGGCAAATGGTGCATCGACGATCACGGCTTCGTGTATAACATCGGCGAGGTTTATTACCCGGGGCGCGCCGCGTGCCCGTGCACCTGCACGGAGGACGGACCGGTGTGCGTGCGGCCCAAGTGCCCGCGCATACACCCGCGCTGCACGCGCATCAAGTACAAGTCCTGCTGTCCGGTGTGTGAGGCCATcagcaaggtgtgtgtgtacggAGGCAAAACATACCGGCTGTTCGAGGAGTTCAGGaTATCTCGGTGTGAGCGGTGTCGCTGTGAGGCCAGTGGTGAAGTGTACTGCAGTATATCGGACTGTCCGGCTCTGCACTGTGTAAACCCTGTATACGAACCCAAGCACTGCTGCCCTGTGTGTAAGAGCGAAACTGGAGCACGGCCTGCTGGGAGAGCAGAGGGCCGACGGGGCAGCAGCGATGACAACAGAAGGCACGAGAGgaacagattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttacagtgAACTCTGATAAGTGAAATCAGAACTGCTCGCCTTTTCTCCAGGCTCttcacatttataccacagcgtgctgcagaattctggattctgattggtcagaagctgttgattgattttctagaacagcagttctgactgtagtgcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242256 lncRNA downstream 35880 3034246 ~ 3039652 (-) True si:dkey-283b1.6
TU242241 lncRNA downstream 42304 3028815 ~ 3033228 (-) True G204524
TU242232 lncRNA downstream 104663 2965883 ~ 2970869 (-) True G204518
TU241989 lncRNA downstream 534007 2541126 ~ 2541525 (-) True G204317
XR_004579377.1 lncRNA downstream 573337 2496612 ~ 2502195 (-) True LOC117598837
TU242401 lncRNA upstream 93244 3171262 ~ 3174277 (-) True G204664
TU242842 lncRNA upstream 522984 3601002 ~ 3602239 (-) True G205038
TU242834 lncRNA upstream 539153 3617171 ~ 3620119 (-) True G205030
TU242844 lncRNA upstream 552676 3630694 ~ 3631383 (-) True G205040
TU242874 lncRNA upstream 626265 3704283 ~ 3738959 (-) True G205063
XM_026916306.2 mRNA downstream 2705 3066745 ~ 3072827 (-) True rpl23
XM_026917006.2 mRNA downstream 11721 3059168 ~ 3063811 (-) True ccdc103
XM_026916632.2 mRNA downstream 16576 3057417 ~ 3058956 (-) True LOC113528219
XM_026917040.2 mRNA downstream 20612 3039981 ~ 3054920 (-) True abi3a
XM_026916326.2 mRNA upstream 76963 3154981 ~ 3159263 (-) True rpl3
XM_026917079.2 mRNA upstream 104967 3182985 ~ 3191017 (-) True rusf1
XM_026917078.2 mRNA upstream 104967 3182985 ~ 3190970 (-) False rusf1
XM_034309806.1 mRNA upstream 122129 3200147 ~ 3213935 (-) False prr14
XM_026916799.2 mRNA upstream 122129 3200147 ~ 3213935 (-) True prr14
XR_004579338.1 other downstream 475180 2599709 ~ 2600352 (-) True LOC117598767
XR_004579451.1 other downstream 1067744 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other downstream 1067745 2003534 ~ 2007787 (-) False LOC113527889
XR_003402974.1 other downstream 1575927 1499515 ~ 1499605 (-) True LOC113528659
XR_003402975.1 other downstream 1576182 1499261 ~ 1499350 (-) True LOC113528660
XR_003402970.1 other upstream 77278 3155296 ~ 3155430 (-) True LOC113528655
XR_003402972.1 other upstream 78599 3156617 ~ 3156709 (-) True LOC113528657
XR_004579380.1 other upstream 304813 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other upstream 321727 3399745 ~ 3413767 (-) False nde1
XR_004579379.1 other upstream 321727 3399745 ~ 3413767 (-) False nde1

Expression Profile