RNA id: XR_003402893.2


Basic Information

Item Value
RNA id XR_003402893.2
length 2403
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC113527909
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3192704 ~ 3200133 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGCGTCTCTTGCAGAGTAAAGAAAGGAAGTGAAACAATTCTTTACTCtgggcacacacactcacacacacacacagactcacacacaggtttatttatttcagtatttattatttttattggatATACAGTTACAGTATAGACTTTCTGAGCAGAAACTGAGGGAACACACAGGAGGCTACCAGATCCTCACAAGTCTACCAGATCCTCACAAGTCTACCAGATCCTCACAAGTCTACCAGATCCTCACAAGTCTACAAGATCCTCACAAGTCTACCAGATCATCACAAGTCTACCAGATCATCACAAGTCTACCAGATCATCACAAGTCTACCAGATCATCACAAGTCTTCTGGATCACCTGAGTTaaagtgttgtgctgttatgagACAGTGAGCGAGTGATCAGGAACTTCAGCCTTTTCCTCCTTCAACTCCCGACGAGTGTAAAAAATGTTAACCTCAGACCACGAACCAAGCAACAGCACTCCGCTGACCGAAACAACGGAGTCAGTCGACGTGGAGAAAGGCTCTGATGGTCAACACCTCGCAGCAAGAGACTACAGGAAGCTGGCTATCTGCAGCATCATATGCGGCCTGTCCTGCATTGGCATCGTGTCCCTCATTTACTCAGTTAAGACTCGAGAGTTCAACAAGAAGTCCGGTGGTGCAATATCGCAGAAAGCCAAAGAGTATTCTCAAAAAGCTCTAAAATGGGGAATAGGAGCCATCTTGGCATGGGCGGGTCTTATTCTTCTCATCCCACTGCTATTGGGACTGCTGTCGTACCTTTTGACATTTATAAACTGAAACACAGGTCATCAAAAATGCCAAATGGACAACATGTGAGCCCAAAAAGGCACAACTGAGAGTCACAGATCCccaaaaaacagacagacataggGCTCCAGTGCTGCCAAGCTGAGACAGAGACCCCAAAATCTTTCAAATCAAGGGAAATGCAGACCTGAAAATGTTGAACTAAGATGCTTGGTGCCATAAGCCCCACAACAAGAGCCAGAGGTccaaaaaacaccaaaacaaaaaaagcacagaggGGCAAGAAAAGGccaaaatgaaaacacagagtccaaaaagacagaaataaaaatcgGTGCGCCCAACAAGAGGTGTGAAGAGCCAGAGACGCACAACTGACAAGAAGCCTTAAAATGGCAAACAGAGACACTGAAGTGAGAGACATAGAGCACCAACAAGCAGAACTCGACACCAACGGCAACAAAGCGGATGATTCCACCACCACCAGGTCTAGTCCTTCTCGTCAGTAATGTGTACGGCTGAAATTTCCTTAAAATATATgttaaacaggaaggaagctattgaagaaaaattatttcagacatgtgaccctgtttggatcaactACAAAATCCAATCAGTTGGTTAAAATGATCATTCCATACAAATCCTGCAAACATTCGACAACTCATTTTTGAGATATTGCACTAATGGGAATCACGGACAGATGGAGTTTGGACACATggacaacacaaacacataatgCCTCTACCATAAAGTGGTGAAGggataataaaaatgcagaccATTATGTCTTGGACCCCTATCCCCctaccccaaaaaaaaaaatcaagagtgAAGGACGGCGAACCATAACGAAGCATGGAGACCCGAAAAACCCAAGCAGCTCCACGTAGAAGGCAACATGCATTTCTGGGCAGAATTTGCACTCCTAAGATAAAGTCTCTCTCATTTGGACAGCAGTTGCTCATTTTGGACAAAACAACTGACCCAAAAGCGGGACAGTTAAGATgaagcttgctttttttttttccacggcGTCGGAATTCTAGAGTGCGCATTAACTTTTCTCACCTGATGGACCAGTGAGCATTAATCTGTTTCAGATCAATATATACTAATTTTACACGTTATATGCATTACAGGAAGTGTCTTTATTCAGAATCACTGAGGGATTGAGACCTAGTAACTTTCTAACTACTGTTATGTAactattgtttgtttttgtgttaatcTGTTACAAGTTACATATATAAAGTTTCACTCAAGCTCGTCTCAAACTGCGTACTCCTGTACCATTCTAAATATATTCACGCTGAGAAATACgaatttaaagaagaaaaaagtgtttgAATCTGATGATTCTCATGTACAACCCACTTACAAGTATGTTTACTAGTTTACTATGTTTTCTAGTTTACAACACAGTATACGTTTTTAAGTATTAGGTCACGGTATGCAGATTGAGACTGGCCCGTGTTCTCAGTGCACACGTCAACATTGCCAAGTCCCCCCCCAACAACAAGCACAAGATTGCGTTACATTTGTTATAACACTGTATTATGAGCTACTGttgtacatttgtatttttatactatGAACATTAAATAACATACTTTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242118 lncRNA upstream 119978 3064905 ~ 3072726 (+) True G204417
TU242111 lncRNA upstream 156541 3034271 ~ 3036163 (+) True G204410
TU242013 lncRNA upstream 289809 2902229 ~ 2902895 (+) False LOC113528221
TU242059 lncRNA upstream 421394 2770686 ~ 2771310 (+) True G204362
TU242026 lncRNA upstream 468895 2656576 ~ 2723809 (+) True G204333
TU242361 lncRNA downstream 15732 3215787 ~ 3218884 (+) True G204633
TU242421 lncRNA downstream 153243 3353298 ~ 3356906 (+) True G204678
TU242422 lncRNA downstream 199714 3399769 ~ 3403347 (+) True G204679
TU242522 lncRNA downstream 334234 3534289 ~ 3587548 (+) False glyr1
TU242534 lncRNA downstream 370708 3570763 ~ 3573520 (+) False glyr1
XM_034310180.1 mRNA upstream 9801 3177549 ~ 3182903 (+) True zgc:113090
XM_034309925.1 mRNA upstream 18419 3159933 ~ 3174285 (+) True kat7a
XM_034309926.1 mRNA upstream 18419 3159933 ~ 3174285 (+) False kat7a
XM_026916304.2 mRNA upstream 46522 3088362 ~ 3146182 (+) True LOC113528048
XM_026916120.2 mRNA upstream 161540 3014983 ~ 3031164 (+) True mpp2a
XM_026917273.2 mRNA downstream 21218 3221273 ~ 3231214 (+) False zgc:153733
XM_026917272.2 mRNA downstream 23576 3223631 ~ 3231214 (+) False zgc:153733
XM_026917271.2 mRNA downstream 23730 3223785 ~ 3231214 (+) False zgc:153733
XM_026917274.2 mRNA downstream 24947 3225002 ~ 3231214 (+) False zgc:153733
XM_034310305.1 mRNA downstream 26236 3226291 ~ 3231214 (+) True zgc:153733
TU242114 other upstream 179845 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 1036855 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1307226 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 1601629 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 1836377 1353334 ~ 1356327 (+) False kmt5c
TU242670 other downstream 766703 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 766703 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 766703 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 766703 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other downstream 771124 3971179 ~ 3971250 (+) True trnae-cuc_26

Expression Profile