RNA id: TU242534


Basic Information

Item Value
RNA id TU242534
length 2736
lncRNA type sense_over
GC content 0.39
exon number 2
gene id glyr1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3534289 ~ 3661164 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggctctgtgcaggacattcgagttcttccactccaaccttcacacaccatgtcttcatggagctcgctttgtgcacagggtcattgtcatgctggagcaggtttgagcctcttagttccagtgaagagaaactgtaaagctacagcacacaaagacagcATACAAAAATTTGTTTGCTTCCAACTTCGTGGCAACAAGTTGGATGTGAtagtcaggggtgcacaaacttttggccatatagtgtagatcaGGAGCCTTTCAGTTCGGTCTAAAACTCTGCTAGCGTGATTTGCAAATCAgatcagtttgtaatcagatccCAGCTGTTAAAATGTCGGTGATTTGCTCCTGCGCTGCTGTcagaatgaaatgcagttttctcctttttcacctGAGCAGATTTTTAAATGCTAGAACCAGGCCTAGgcaatatgataaaaatatcatCACGATTCTCtaagacatttctacgatacacaatATACGTCCTGATGTATAGGCTAGCTCacctatattttattttgaaaagaaagatgctttatttaatgtctgtctgttattttatattaaaaatagtttattaattaaataaaaatatttgacaGTGAAATGGAGAAGAATCTGTAGAAACTGTTTACATGattagtttgtaattatttaaaaaaggttaaaaaatttAAGAGAGCTTGATAACTTAGGAAAATGTGTTGTGATGTATACAAGGGTGAGGCAAAgaatcataatttttttattttgcactttttattGCAAATAGATGTCCATTTCTTTTAGTGTCCCAGCGCTTAACGAGCCTCCAGATTCctctaggaaaaaaaattatttttaatctatGTTGCgcttttcagatttttatttgactCACACTCGTAATTTAATAATACTcataattaatataatgcaCAGCAAGAGATTTAGGTCACTCAGTAAAAAGgaattaaagctttttttttttaaaaacaaggtcgaaacaaaatgaaacagaacCGCAGCAggtaaaaaaatctgttttgcaCGGGTGAGTAGGCCAGATTTCCTGCGATGCTAATCAGTGAGTACAGGAAGCACTCATCTCTGCTCACTGTGTAATCTTGGAGGCAATTACTTTGTCCACTCGGCTTCccatttatctaaaaaaaatgcgGCGTGTATCACGGCACAGTGTCTGATTCGACCGATCCGATTCctcccaccacacacacgcgGCTGTACACAGTCACACATGAGCAGAGTGTCGGCTCTTCACAGAATAGTTTCCAATCTAACTCTCTTCCATTATAGCCGGTAAAGGATGACCCACATTTCCATCACTTTCTGCTCAGCCAGTCTGAGAAGGTAAGAGGATGTGCAGAATGCTTTCAGTCAGCATTTCTTCCTGTCCTCTGTCTCCTGCACTTGACTTGATGTTTCGTTTTCACTCCTACAACGACTCCCCTGTCTCTCTTCACTGCtacagtgttagtgttttttttttttttttaaaaaaaaagctagctcaagatttctctttctttacgGAGGAATTTTTCCAGGTTAAATAGaaatactgaaagaaaatgtgattttaatttGGCGCCAACTTTCTAGACCAATCAAATTCAGGATTTATTAGACTCTTTTGATTGGACCTGCTTGATCTGATTGTTCGTAActaaggctgctttcacacctGGCGTTATGAGCACGTCTCCGGTGACCACGTGATCGGATTTATACGTCGTTTCCGCTGGAGAAAGGCTGTCGCACACTTTTACGTCAGTCCCATGATTTCTGTCTTATGTACCTGCACAGactgtttcaaatgttttaatctCGTGGTCTGCCAGCGAAACTTATAAACGAACGAGATATGAGACGACAAGTGAAGCcatgaaaagcagctgcttttgtgTCTGCTGTTAAGGCATCGTGTTTATCCATAAGCAGCAGCTCTACAGTTCTGCGTGATTGCTGAACAGTCTGGCGATGATTACGTATCCTCCGGTGAGAGCAGTGACGCAGTCGATTGGTTGGTTCTTCGTTGCTGTCTGAGACACTataaatgtgatgtgatgtcatACACGTCCCATATAACGTCCGAATATGGTTTGAGTGATCGGATCACAGCGCGTCTTCGAGACGTATTTGATCCCGTTCACTCCTATACTTAGCATTAATACCAGGTGTGAGCGGGACCCAAGGCTGCtttcacatttttccacatttatttatttcttactcTCCAGTCAACATTTTACATGTGATCCAGTGTGGGGATGACCAGCTTTTTATAAATCACCTCTGCCGCAGATTTTTCATTAGAGCTAAGCTTTTACAGTTGAGAAAAATGTTCAGATTTTCAGAAAAGTTCTGAATGATGTCAATCCGGTCGCAAGTTAGGGGGGTCACGTGGGGAAAAACTTAAAACATTGAGAACTTTGTTTCTGGTGGAGGAGGGAAATATGAAGATTTATGACTCATTggattgaaaatattttattgccaGTATTCTAATGTTGCAGcataagtaaatataaaaatgtgtcacACGAGCAGCCCAAATTCTTATGATTTTCAGCCTTTCAGCCTTGTTTTTCAAAGCTACAGCGACGACAGACAACCTcatcttcattttcatctttattactgataattatataattataataaatctaatctagacaGCAAGCTAGACTAGTTAGTGGTCCGATACTAGCTAGGACCGGTACGAATGTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242422 lncRNA upstream 167416 3399769 ~ 3403347 (+) True G204679
TU242421 lncRNA upstream 213857 3353298 ~ 3356906 (+) True G204678
TU242361 lncRNA upstream 351879 3215787 ~ 3218884 (+) True G204633
XR_003402893.2 lncRNA upstream 370708 3192704 ~ 3200055 (+) True LOC113527909
TU242118 lncRNA upstream 498037 3064905 ~ 3072726 (+) True G204417
TU242528 lncRNA downstream 14382 3587902 ~ 3590031 (+) True G204771
TU242524 lncRNA downstream 59651 3633171 ~ 3661164 (+) False glyr1
TU242550 lncRNA downstream 72243 3645763 ~ 3646675 (+) True G204790
TU242531 lncRNA downstream 74669 3648189 ~ 3649538 (+) True G204774
TU242530 lncRNA downstream 99464 3672984 ~ 3715580 (+) True G204773
XM_026916263.2 mRNA upstream 10085 3541110 ~ 3560678 (+) True ppl
XM_026917218.2 mRNA upstream 70335 3485744 ~ 3500428 (+) True rrn3
XM_026916222.2 mRNA upstream 87015 3480238 ~ 3483748 (+) True si:dkeyp-72e1.6
XM_026917067.2 mRNA upstream 93438 3470453 ~ 3477325 (+) True mpv17l
XM_034310007.1 mRNA upstream 217911 3317323 ~ 3352852 (+) True LOC113528556
XM_034309671.1 mRNA downstream 56919 3630439 ~ 3639871 (+) True dus1l
XM_026916172.2 mRNA downstream 56920 3630440 ~ 3639871 (+) False dus1l
XM_034309672.1 mRNA downstream 57329 3630849 ~ 3639871 (+) False dus1l
XM_026916239.2 mRNA downstream 111958 3685478 ~ 3692367 (+) True zgc:86896
XM_026916237.2 mRNA downstream 121209 3694729 ~ 3714082 (+) True wipi1
TU242330 other upstream 370630 3192712 ~ 3200133 (+) False LOC113527909
TU242114 other upstream 557904 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 1414914 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1685285 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 1979688 1561594 ~ 1591075 (+) False syt3
TU242670 other downstream 393238 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 393238 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 393238 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 393238 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other downstream 397659 3971179 ~ 3971250 (+) True trnae-cuc_26

Expression Profile