RNA id: TU242531


Basic Information

Item Value
RNA id TU242531
length 1284
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G204774
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3648189 ~ 3649538 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGCGtttcactattatttttttccaagttcATGCGAGGCCCAATGAAACGAGGCCTTGTGTTTGACACTTGCTCTACATAGTACTGCACCAAGCCTCATCTCCAGTCTTCTCTGCCCTCTATTCCACCTCCAGAACCTTAATCTTCTAATCAGCAGCTTTTAACTATTCCACACTCTCAGTGGAAGTTCACAGGTGACCTGGCCTTTTCAAAAGCGATGtggtgtaaaaatgtataaacgGTGCCATAAGACGGTCTCTGAGGATGACTGGTTTCAGGATGAGTGTTATTACTAGTCATTTCATACTGCTGTCAGCcagtaacaacaataaaaaaaaaaaaaacaataaaagaaaatgatagaATACCTGATGCTTTCTTTGATGGAGTTTCCCTTGTAGTTTTTTAGGTCGGTGTCGAGTTTCTCCAGTTTGAGCAGGGCTTTTTTCCGGGTTGATTCGGCCCAGGCTGTGTCGAGGGGAGGAGGCTCCACTGCTCCTTCAGGAACGGCGTCTGGCACTCCCTGCATTTCCctgaggaaaacacacacagacacgcacacagacagacacgcacacagacagacagacacgcacacacacagacagacacgcacacacacagacagacacgcacacagacagacacgcacacagacacgcaaacacacagacaatgTTTGTATCTACAAATAACTGGAAAATGTACAACATTAATTCTGACTCATTTTTTACACCAGCTTTTCAGACCTTAAAAATGCACTTgtaatcttttttattatttcctctCTTTGTGAAGCACTGATCTGATTCAACCTCATCCATTTtgtgcacaaaaaaaagcaaaacaaccaaaaaacagATTCGACAACATCCATGACATGTaacaaactctttttttttttaaactagacCGGTTTCAGATTAATTAGTATGCATAAATTataaacttaaagttaaaacatgatttttcaTGACACAACAAGCTCAAGTGTTTTCCTGGAACATGATTAAGTTCAATGATATTTTGTAATAGAGGGAATTATAGAAGATTTACAGGAGCTGCTCTTGCCTTGTGGCTTCAGTGAGCTTGCGATGGATCTCTTCGTAAACATCGACGTTAAATGTTCTTTGGACAAAAGACAAGGCCATCTTCAGAGCTTCCACGCGTAACTGGGGGCAGTGATCAGCGATGAACTGCAGCCGCTCGATCCTCATCAGTCCGCTGTAGCTGGACGCGTACTGCTCCAGATCCTGTCGGAGGAATGAAAACTTTAAATGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242550 lncRNA upstream 1514 3645763 ~ 3646675 (+) True G204790
TU242528 lncRNA upstream 58158 3587902 ~ 3590031 (+) True G204771
TU242522 lncRNA upstream 60641 3534289 ~ 3587548 (+) False glyr1
TU242534 lncRNA upstream 74669 3570763 ~ 3573520 (+) False glyr1
TU242422 lncRNA upstream 244842 3399769 ~ 3403347 (+) True G204679
TU242530 lncRNA downstream 23446 3672984 ~ 3715580 (+) True G204773
TU242579 lncRNA downstream 127066 3776604 ~ 3786578 (+) True G204815
TU242596 lncRNA downstream 203958 3853496 ~ 3882959 (+) True G204832
XR_003402906.2 lncRNA downstream 206516 3856054 ~ 3868097 (+) True LOC113528035
XR_004579351.1 lncRNA downstream 206516 3856054 ~ 3866338 (+) False LOC113528035
XM_034309671.1 mRNA upstream 8318 3630439 ~ 3639871 (+) True dus1l
XM_026916172.2 mRNA upstream 8318 3630440 ~ 3639871 (+) False dus1l
XM_034309672.1 mRNA upstream 8318 3630849 ~ 3639871 (+) False dus1l
XM_034309981.1 mRNA upstream 60493 3563650 ~ 3587696 (+) False glyr1
XM_026916239.2 mRNA downstream 35940 3685478 ~ 3692367 (+) True zgc:86896
XM_026916237.2 mRNA downstream 45191 3694729 ~ 3714082 (+) True wipi1
XM_034309825.1 mRNA downstream 45191 3694729 ~ 3714082 (+) False wipi1
XM_026916693.2 mRNA downstream 74225 3723763 ~ 3733885 (+) True slc16a6b
XM_026916694.2 mRNA downstream 74225 3723763 ~ 3733885 (+) False slc16a6b
TU242330 other upstream 448056 3192712 ~ 3200133 (+) False LOC113527909
TU242114 other upstream 635330 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 1492340 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1762711 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 2057114 1561594 ~ 1591075 (+) False syt3
TU242670 other downstream 317220 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 317220 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 317220 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 317220 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other downstream 321641 3971179 ~ 3971250 (+) True trnae-cuc_26

Expression Profile