Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU242596 |
| length | 302 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 3 |
| gene id | G204832 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 3853496 ~ 3882959 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU242579 | lncRNA | upstream | 66918 | 3776604 ~ 3786578 (+) | True | G204815 |
| TU242530 | lncRNA | upstream | 137916 | 3672984 ~ 3715580 (+) | True | G204773 |
| TU242524 | lncRNA | upstream | 192332 | 3633171 ~ 3661164 (+) | False | glyr1 |
| TU242531 | lncRNA | upstream | 203958 | 3648189 ~ 3649538 (+) | True | G204774 |
| TU242550 | lncRNA | upstream | 206821 | 3645763 ~ 3646675 (+) | True | G204790 |
| TU242706 | lncRNA | downstream | 222984 | 4105943 ~ 4107728 (+) | True | G204912 |
| TU242762 | lncRNA | downstream | 308778 | 4191737 ~ 4192099 (+) | True | G204965 |
| TU243084 | lncRNA | downstream | 472580 | 4355539 ~ 4356186 (+) | True | G205242 |
| TU243087 | lncRNA | downstream | 473359 | 4356318 ~ 4356536 (+) | True | G205245 |
| TU243092 | lncRNA | downstream | 476446 | 4359405 ~ 4360374 (+) | True | G205250 |
| XM_026916074.2 | mRNA | upstream | 97312 | 3747501 ~ 3756184 (+) | True | LOC113527907 |
| XM_026917083.2 | mRNA | upstream | 111041 | 3737460 ~ 3742455 (+) | True | LOC113528497 |
| XM_026916693.2 | mRNA | upstream | 119611 | 3723763 ~ 3733885 (+) | True | slc16a6b |
| XM_026916694.2 | mRNA | upstream | 119611 | 3723763 ~ 3733885 (+) | False | slc16a6b |
| XM_034309825.1 | mRNA | upstream | 139414 | 3694729 ~ 3714082 (+) | False | wipi1 |
| XM_034310038.1 | mRNA | downstream | 27246 | 3910205 ~ 3916855 (+) | True | rnf113a |
| XM_026916872.2 | mRNA | downstream | 27250 | 3910209 ~ 3916855 (+) | False | rnf113a |
| XM_034310066.1 | mRNA | downstream | 52437 | 3935396 ~ 3947545 (+) | False | ddx42 |
| XM_034310068.1 | mRNA | downstream | 52460 | 3935419 ~ 3947545 (+) | False | ddx42 |
| XM_034310065.1 | mRNA | downstream | 52462 | 3935421 ~ 3947545 (+) | False | ddx42 |
| TU242330 | other | upstream | 653363 | 3192712 ~ 3200133 (+) | False | LOC113527909 |
| TU242114 | other | upstream | 840637 | 3003672 ~ 3012859 (+) | False | pyya |
| XR_004579364.1 | other | upstream | 1697647 | 2155599 ~ 2155849 (+) | True | LOC117598829 |
| TU241504 | other | upstream | 1968018 | 1883075 ~ 1885478 (+) | False | ccndx |
| TU241220 | other | upstream | 2262421 | 1561594 ~ 1591075 (+) | False | syt3 |
| TU242670 | other | downstream | 83799 | 3966758 ~ 3986284 (+) | True | limd2 |
| TU242671 | other | downstream | 83799 | 3966758 ~ 3986284 (+) | False | limd2 |
| TU242672 | other | downstream | 83799 | 3966758 ~ 3986284 (+) | False | limd2 |
| TU242673 | other | downstream | 83799 | 3966758 ~ 3986284 (+) | False | limd2 |
| trnae-cuc_26 | other | downstream | 88220 | 3971179 ~ 3971250 (+) | True | trnae-cuc_26 |
