RNA id: TU242706


Basic Information

Item Value
RNA id TU242706
length 1754
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G204912
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4105943 ~ 4107728 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaaataaattccacacactctctcagtccacttttattttctgaacATGACTACTTAACCACTGAAATATTAAGCACATGATTATTATCCTGGCTATTTATTgaagcttttttatttctgaacttgaACACATtattaggtccaagttgacattatttatagaccgACAtcttttgagttattgaggttccTATTGAACCCACTGAATTCAAATGAGCAGTTAAATCAGTTTTGAACCATAAGAACTCAGCGCACTGTTTCGTCTAAAACAGTGtcatctctgtttttcctcttaGATTTGTCCAGTATGTagtgtgccttttttttttttttttaaacaatttcacACAAGTTTTGCATAAAGCATAACAGAACTGAGAAATATGAATAGAGATtaatctactgtatattttaacacacaatTCAATTCACAGAAAATCCACCATCGTACTTTCACACAACAGACTTTAATGTCCGAGTTTAACATTTTGCTTTACGAGCAAACCTCCATATGACCACAAGGACGTGTGTGTTTAATAGTTGCTACCTGGGCTTTTTGGTGCTTTTTACCAAAAAACTTTTACAAGCACAAAACGTAAGATCGTTGACGCAACTGATGATTTAAGCTGAATTCAAAACACACTGTATTATTAGCAGCTCAGTTTTCATATCTTCTACGTAGTTTAGAAGTTACAGGCTGATGAGGTCTGATTGCACAAATATAAatagcacttttattttattttattttatttcattttattctattttattttatgttatatgttCGGACACCCGTCCTTACCtccaagcatttttttttttttttactttagctCCTGTAAATTATTTTGAGTTCTTCAGATGATTTGAGGGATTCGGAATTTGTTAAGAAACACAAGGagagcttctctctctctggaagcTTCAGCTAACAGGCTTTTAGACTGAGTGAGTCATGGAGCAGTTATCACTATTGTAGAAATTTTATGTTTATCCAGTTCTAGAAGCTGTTTGTGCTCTCGCGTCTCATCTCCAGATCGCCGAGTTTCTAGAGATCGTCCCTGAGAACGCAGACCCTCCAGAAGGTCTCTGTATCCCATCTCAGACCCActgtacgttttttttttttttccctgaccAGAAATTGACACTGTAAGAAAATATCTTGGGCATTTTTGAACTGTATGTATCTCATGTATCAGTTACTGAACAGCACAAATGTATTTTCAGTGTATGGACTCATAATTTTTCAGTTGTCTTCTGATTATATTAGAGAGAATTAAGCATTAAGTGACCGGACACATAATTCATGACTGATTCAGTGAACAAAGAATCGAATTGATAAAGACTGTGGTTTAGTTAAAAACATgccaaagtgtgtgtatgtgtacacatCAGGAGAGGTTTGCGTGCTCTTGTATACTCTAAAGTGTCACAGTGTATTTGaaatgtaatatgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagaaagaaaagattaCACTGTTAATGTTATTGAAAGATGGACCTGTGAAGGATGCGCGTGTACGTCAGATTGAGCTGAAAACCTTTACTGGACTGTTAAAGGTTTACAAAAAGCACAAACTGCTGTTTTTTAGATTAAAGATTATTTATAACATCGTGATCGTGTATGCGTAATCATTTcctaaaataacttttttatttcagtcctGCAGTTGTCCTAGTTTGACTTGCACATTTTAATCGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242596 lncRNA upstream 222984 3853496 ~ 3882959 (+) True G204832
TU242626 lncRNA upstream 236200 3864913 ~ 3869743 (+) True G204860
XR_003402906.2 lncRNA upstream 237846 3856054 ~ 3868097 (+) True LOC113528035
XR_004579351.1 lncRNA upstream 239605 3856054 ~ 3866338 (+) False LOC113528035
TU242579 lncRNA upstream 319365 3776604 ~ 3786578 (+) True G204815
TU242762 lncRNA downstream 84009 4191737 ~ 4192099 (+) True G204965
TU243084 lncRNA downstream 247811 4355539 ~ 4356186 (+) True G205242
TU243087 lncRNA downstream 248590 4356318 ~ 4356536 (+) True G205245
TU243092 lncRNA downstream 251677 4359405 ~ 4360374 (+) True G205250
TU243105 lncRNA downstream 286197 4393925 ~ 4394258 (+) True G205263
XM_026916773.2 mRNA upstream 1189 4057751 ~ 4104754 (+) True kcnh6a
XM_026916775.2 mRNA upstream 1189 4057751 ~ 4104754 (+) False kcnh6a
XM_026917237.2 mRNA upstream 61568 4034566 ~ 4044375 (+) True gfap
XM_034310183.1 mRNA upstream 75493 4029809 ~ 4030450 (+) True LOC117598989
XM_026916864.2 mRNA upstream 86550 3990758 ~ 4019393 (+) True map3k3
XM_026916776.2 mRNA downstream 13126 4120854 ~ 4131475 (+) True ccdc47
XM_026916489.2 mRNA downstream 108187 4215915 ~ 4226045 (+) True moto
XM_026916490.2 mRNA downstream 108187 4215915 ~ 4226045 (+) False moto
XM_034310291.1 mRNA downstream 419865 4527593 ~ 4549478 (+) True ezh1
XM_026916627.2 mRNA downstream 518765 4626493 ~ 4670646 (+) True plekhh3
TU242670 other upstream 119659 3966758 ~ 3986284 (+) True limd2
TU242671 other upstream 119659 3966758 ~ 3986284 (+) False limd2
TU242672 other upstream 119659 3966758 ~ 3986284 (+) False limd2
TU242673 other upstream 119659 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other upstream 134693 3971179 ~ 3971250 (+) True trnae-cuc_26
XR_003402913.2 other downstream 605145 4712873 ~ 4721468 (+) True psmc3ip
XR_003402967.1 other downstream 982470 5090198 ~ 5090283 (+) True LOC113528651
XR_003402964.1 other downstream 982792 5090520 ~ 5090604 (+) True LOC113528648
XR_003402966.1 other downstream 983104 5090832 ~ 5090916 (+) True LOC113528650
XR_003402965.1 other downstream 983520 5091248 ~ 5091332 (+) True LOC113528649

Expression Profile