RNA id: TU242834


Basic Information

Item Value
RNA id TU242834
length 2617
lncRNA type intronic
GC content 0.41
exon number 3
gene id G205030
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3617171 ~ 3620119 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGCATCACTATCAGCAcgggattatgggtaatgtaggaagATGTTAATCAAAGTGAGTATAGACGAGCATTTCGAAGAAAGACttttaatcaaaacaaaaaaaaaaacagttaattaTAACGATTTAATATGCGAGTCGTTCCTAAAGCCTATTATGATGCGATTGTTATGCTAATTCTGTTAATTAATCAAGGCTAACGAGGTGTTCCTGACCATTACACACGCCTCGCTCATCATCCTGAGCTGACAGCGTCATTAAGAATACGCTAACACCGTTTCGCATTTACACATTAACGATTTTGAGGCGCGTAACGAAAATGATTTGTTTGCGTACGCAGTATTTATCTCAGTATTTATGCAAAGTATCTCAGCGAGgatcgtttcttttttttttttttttcctcccccccGAGATCACTGGTTGATAGTGAGTCATAGAACATGgggcgtacacacacacacacacacgcacgtgtacacacacacacgcacgtacacacacacacacacacacgaaaccTTTTAAACAGCCTATGAAGAAGTCAGTATCAGGTACCAGGTGATACTCGGAGCTCTTGTGTGTTCATAGAAAAGAAATTACTGACCTGCTGTTTCTGAtcaattttgtatatttttatcttGTAATTGTTGCCTTTAGTCTGTAAAGTCTATATTGGGGGGTAGACTGATTAAACATACATATTTGAATGAACTAGAAGTTCTGATAATGTTGTCTGATATGATTTTTAAGCTCTCAAACGTGAGACGTTTTAAActcaaacaggaaaaaatgaCACACGAGttttataagtaattataacgCTGCTTTATAATGAGCTAAAATAACATCAGAGTAGAGTGAAGTTCATGAATAGTTTTCTTCTTCGTTTAAAGAGATGTTATTAACGCTTCATTCATCACTGTGATTTCtgaaaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaCACCAGAGTGTTTGAAAGGGTTCTGTTGTAGCAAGCTTGGTTGTTCCACTGATAGACCCCTTACAGTTTCTCCAGACTGTTTCCCTGTCTAAAAGGTTTCTCTTGTAGGAAGCTTGGTGGTTGTTCCATTGttggaacccttaaaggttctgtgtggAACCCTACATCGGAGCGTTCTCCTTTCTGGAAAGGTTCTCTTGTATGATGCTTGGTTCTTGTCACTCTcgtagaacccttaaaggttctctgTGGAGCCCTGCTCCAGACTGTTTCCCTACCTGAAAGGGTTCTCTTGTATGACGCTTGGTTCTTGTCTCTCTggtagaacccttaaaggttctgtgtagaaccctacaccGGAGCGTTCTCCTATCTGGAAAGGTTCTCTTGTATGACGCTTGGTTCTTGCTCctcttgaagaacccttaaaggttctgtgtggATCCCTACACCAGAGCGTTCCCCTGTCTGATAAATTATTCAAAGACCCCGTAAACTCCATCTTGAAACacgttaaatatgtttatattgaaagaTGCGTGAAATATCTGAAAGGGTTCTCTCGTAGGAAGTTTGGTTGTTGTTCCTTTGGTAGAACCCTTAAATGTTTGTTCGATGAGTCTGTCGTCTGAGTGTTAGTTTTCGGCGTGGTTCTCATGCGCTGACAATGACGTAATATAATCTCCGCTATCATCACACGGGTTTTTCAGCCAGCTGCTCCTCTCCTCTCGAGTGCACTCGCTTCACCTCGCCTGGCCAGCGTTTGGGAATTAATTAAAGTCCAAAATGAAACCCACACCACTTTCCCCTCATGTTCCTGCCTCGcgtttgctttttattttagtttttgctCTGGAGCTGCGACGCTAATATAGCTGGTAAAATTAAGCTACCGGTTTAGCATGTCTCAAAAGACATTGCCTTATACATGTTTCACAAAATAGCTGAAGTCATCATAAATTTGAAGCTCAGTGTTTCTCTTTGTCTGTATTTATAGATAAATGTGTCACACAgagtcagaaaccacatcaggAAGAGATAAAGCTGAGGTTTGTGCAGTGCGCGATTGGAGGCTGTGAGCTTGGCTTACACGCTAACTCACGACAGGAGTCCAATAAACAccttacatttcatttacattgtTTATTACACATAGGTGGCACGAACAGGACGTCATTTTTCATCGTCATGCCCATTTCGTTCAAAGTGTTCCAGCGTTTAATATAAGTGTCTGGATTCTTCTAGGGGGGAAAATCGACTCTCTTATGTCACGCTttgaaggttttcatttgactcgcACTCGTAGCTACAGCACAAAACTCACAGAGTAAACCTCAGACCAAAACCACAGCTTGACTGATCGAGTACATCGTGTTCTGGAGATCTGGACTGAGGAAGAAAGTCGTCGTTTGTGTAattatttcatctttatttcaCGCCGTCGCCGTGTTTTCTACGCTTTTAAAGTTTGTGTGATTATCTACACGTACGTGccaaacttatttatttatttatttatttatttatttttaacgtTGCCGTATTCCTGAGCAATAATTCTAACATTTCTAGAGATATCCAGAGATGGCACGACGCCAGTTTTTCTTTTCCGGTGCGGATGCAGAAATGCTGCGTATCAGCCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242842 lncRNA downstream 14932 3601002 ~ 3602239 (-) True G205038
TU242401 lncRNA downstream 442894 3171262 ~ 3174277 (-) True G204664
TU242266 lncRNA downstream 541483 3073977 ~ 3075688 (-) False si:dkey-283b1.7
TU242256 lncRNA downstream 577519 3034246 ~ 3039652 (-) True si:dkey-283b1.6
TU242241 lncRNA downstream 583943 3028815 ~ 3033228 (-) True G204524
TU242844 lncRNA upstream 10575 3630694 ~ 3631383 (-) True G205040
TU242874 lncRNA upstream 84164 3704283 ~ 3738959 (-) True G205063
TU242898 lncRNA upstream 148736 3768855 ~ 3776450 (-) False kcnc3a
TU242900 lncRNA upstream 148736 3768855 ~ 3776450 (-) False kcnc3a
TU242970 lncRNA upstream 328730 3948849 ~ 3957710 (-) False G205145
XM_034310120.1 mRNA downstream 92066 3502035 ~ 3525105 (-) False si:dkeyp-72e1.9
XM_034310231.1 mRNA upstream 21422 3641541 ~ 3653582 (-) True gps1
XM_034310234.1 mRNA upstream 21422 3641541 ~ 3653580 (-) False gps1
XM_034310233.1 mRNA upstream 21834 3641953 ~ 3657287 (-) False gps1
XM_034310232.1 mRNA upstream 21834 3641953 ~ 3657287 (-) False gps1
XM_026916575.2 mRNA upstream 38337 3658456 ~ 3669302 (-) True rac3a
XR_004579380.1 other downstream 203404 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other downstream 203404 3399745 ~ 3413767 (-) False nde1
XR_004579379.1 other downstream 203404 3399745 ~ 3413767 (-) False nde1
XR_003402972.1 other downstream 460462 3156617 ~ 3156709 (-) True LOC113528657
XR_003402970.1 other downstream 461741 3155296 ~ 3155430 (-) True LOC113528655
TU243007 other upstream 420362 4040481 ~ 4044575 (-) True G205173
XR_004579349.1 other upstream 472794 4092913 ~ 4117643 (-) False dcaf7
XR_004579368.1 other upstream 1102298 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 1107975 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 1469217 5089336 ~ 5091922 (-) False G205633

Expression Profile