RNA id: TU242874


Basic Information

Item Value
RNA id TU242874
length 3440
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G205063
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3704283 ~ 3738959 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttatttatttattttttaTGCTTTGCATAATTTTATTCCTATTTTCTAcagtttctttttaatttttatttatttattttttttggtcttcCAGCAATTCTGcgaaatacaaataaaatcatagGCACGTACATTTAAAAGCACATCCTGTTGTATTAGTGTTCAGGATGATGACGTGTAAACATGGATTAGGTATTAATACAGCAAATAcgttaaaaacaacaaaaaaacaaattccaTCTGTAAATATGACGATGTTAAACATAAACGAATAAAACAAtatcattataatataatataatataatacgaTGCTACAGTTTTACATCTTCAAGAAATGTGTGTCGTGTCCGTGGTTACGGTTTGTTCATGCATATAACACACCCTTCAGGAGAGCGAGCAACAACGACCACGCCCTCCTGATGCTTTTTCTGCTCGTGAGGTTAGCACCCTGAAATGAGTTGGATTAGTCCGGAACTGGGTTAATTATTCCTGAAACGCGTTAATTAGTCCCGGCTCGTGTACTGAGGGTCGTTCCGCTCCGGCTTGAAGGCTCTCACGGACGGCCGGTTCTGCCACGACGGGATCCGCCAAGACACCGATTTATCTACCAGAAACCAGAATCACAAGAAAGTTTTTATTGTTCTCTCGTGCTCGGGTGTGTTATAGACAAAACAACAGAGTGCagcagcaggagtgtgtgttatcaggatcacacgcacacacacgcacacacacgcacacacacactaatgcttaatgcaaaaataatacatgAACAATCCCTGTGTTTTCATTACTGTTTCTAATGCACCCTAGACACGTGTCCACTTGCAGCATGAGTGacttaatgaattaatgaatgacactttttattcatttatagttacatgttgtgacaaaacaagttagttcctgttatcacttccatTTCAGCAGCTATAAAtcttcattccctcaccagcctctcttttattcttcctctttttagtgctgacactggagactccttccaaaaacgttACAAAACATCGCCTGacatttctgaacatttatgaatatgtggAGTCatacgtccctgtgaatgagctgttactatagaaacgataacatattaaaatgtgtttcgCAGCTGcgttactgtcagagctgctgttatagaaaattaatcaagtcTTACaacactgaccaatcagaatcgagaattcaacagcattgtggcaTAAAGAGGAATAACCAATGAGTAACTACAACGCATTTCCATATCAAATGCTATTGTTCAAGAAATTATTTTAACTCTCTAGCTATGTGGTTTGGTACCTAGctgttttttactttttatttgtagttgttTCTTGGGCAGTTGAGGCTCGTGAAGATTTACTCGCTCGCTGTTTTGCTAACACGTAGTAGCAGAGTAAACAGTTCCGTCATCTGTCACATATGACTGAAGGTGTTGGAGGAACAAATACCAaacctaaaaacacacaagtaaaTGTTCTGGTTTGGAAATAAGAGGTATTTTAATTGCTTACAATGCagcaatgccttctgggtaagAGCTCCAGTGAGTTGATCCTCATCTAACGCTTATCTAAGAAGCTTCAGTCAGGCtgctaaaattaaataaaaagaaaggccCTTAAGATGGACATGGGGTCTCAACTAAAGGGAAGTGCACAGGGTGTGTTTAAAACAGAACTCAGACACATGGTACTGTCATTGATTTGGAATTCATGTAAATCTCGTCCATTTTCATGCAAAGCGTCTCTTTAAGAATGGCACTCGTTGCCAGATTGGGTGAATTTGCATAGGTTTGACACCAATTTGGCAATGTTGGTTAtgctaaaattttttttttttgctacctAGGAAGAAAAGTTATAATTTGGCCAAATGTGCAACCATTTTACTCCAAACGAGACGAAACAGACAAGATGTAGTTGGTGTCTGACATTTGCTTCCTTTTTACCTTTGTACTGGGCTAATATATTGAGAATGTGTTTATGGAAAAGATCTTGCGTGAGACTTttgttacttgttagctacagtTTTACATTATCTTAAGACTATTACTTGTCACAACGTATGATACGACCCCAATAAAGTCTTGGCCGAACTTTATAAAACTGTGCGATAACGTTCTCCGTGTCAGGTTATACGATGAatgatagacctgcgattaaagaaaattactacgctctgcttacgtcatcaatTAGCGTGATCTGGAAATAAACAcatcacataaacacaaacactgttcaacgtgagcttgaggtaataaggagatTTTTCGTAGCATGTTTCGTTGACATTTCCCCCCAACACCGCTACTATATTTGTAGCCATCACGTGATGGCTTTTTTGCGTAAGTCCTTCTTTTGGTAGCTGTTAGACGAGCGTCGTAGCAGCTGAGATTTTAATCCAATATTTCTCACACTGGAAGAACTTCAGAACTTTGTCATTAGCTGTCTTTTGTCGCAATGCCACCAAAGAAATCATGTAcaatgtgcaatttttttttgcgaCAGAAAAACCAGGCCATAAAGCGTAAAGCCAGTGTAGCCTTGTGAAAATCTGTGTCCATTAAAAAGACGAGAAGAAAATCGTTTCTCCTGTGAAAGGGCTTTTGGATTATAATTTGTGAGTTTTGCGTAATCCAAAAATAAGTTTACAttggatttatatggaattaataaaaaactttaaatacaaATCATTTTGTTTACTGTGATGAGACACGGTCAGTCATCTTAAGGACACGAATAATAAGCATTTCCAGATGATGTGGAAACACTAACAGATGCTGTGGAaacactgtggaaaaaaaataaaattaatagtaaataaaaaaaataaaaatacaaatacatgagGAGTCATAGTGTGTCATACTGCGTCATACAACATGTGTGGGTTAAACTCACACTACTGCTGGTTTATTACACATAAATTAGTCACCTCTTTCCTGTAGTAATGCTGCTCTGACTGATGGATCTCGAACTTAAAGGAGaagttcagccaaaaatgaaatgaccaCAACATCCCTGTTGGTCCAAATGTAGTTCAGCAGCCAACACAGCTTTGCTTCTTTAGTTATGAAGTCTAACGTAGCTAACAAATAAGAAAATCATACGGCTACCAGTTCAGCATTGTGCAGCGTCTAAATGGTCACATGATCGTGTCTCCACAATCGTCTTTGTGGACGTGTTCAATGTCTCAGATTTGCtcatgtggtttctgacacactGTTATTTATAAAGACGGACATCGTAAGTCATCGTCAGTAGATATCAGTATCATCCATCAGACTTAGATAGAAGGTGTGGTCTAAGATTTGAAAGCAGAGCTGAATGTTAGAAATGactcacatatttattttatacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242844 lncRNA downstream 72900 3630694 ~ 3631383 (-) True G205040
TU242834 lncRNA downstream 84164 3617171 ~ 3620119 (-) True G205030
TU242842 lncRNA downstream 102044 3601002 ~ 3602239 (-) True G205038
TU242401 lncRNA downstream 530006 3171262 ~ 3174277 (-) True G204664
TU242266 lncRNA downstream 628595 3073977 ~ 3075688 (-) False si:dkey-283b1.7
TU242898 lncRNA upstream 29896 3768855 ~ 3776450 (-) False kcnc3a
TU242900 lncRNA upstream 29896 3768855 ~ 3776450 (-) False kcnc3a
TU242970 lncRNA upstream 209890 3948849 ~ 3957710 (-) False G205145
TU242972 lncRNA upstream 209890 3948849 ~ 3957710 (-) True G205145
TU242974 lncRNA upstream 209890 3948849 ~ 3957710 (-) False G205145
XM_026916349.2 mRNA downstream 20960 3672980 ~ 3683323 (-) True prkar1aa
XM_026916575.2 mRNA downstream 34981 3658456 ~ 3669302 (-) True rac3a
XM_034310233.1 mRNA downstream 46996 3641953 ~ 3657287 (-) False gps1
XM_034310232.1 mRNA downstream 46996 3641953 ~ 3657287 (-) False gps1
XM_034310231.1 mRNA downstream 50701 3641541 ~ 3653582 (-) True gps1
XM_026916909.2 mRNA upstream 18026 3756985 ~ 3760988 (-) True LOC113528389
XM_034309836.1 mRNA upstream 34624 3773583 ~ 3865700 (-) False kcnc3a
XM_034309833.1 mRNA upstream 37937 3776896 ~ 3865706 (-) True kcnc3a
XM_034309835.1 mRNA upstream 37937 3776896 ~ 3865705 (-) False kcnc3a
XM_026916273.2 mRNA upstream 37937 3776896 ~ 3865704 (-) False kcnc3a
XR_004579380.1 other downstream 290516 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other downstream 290516 3399745 ~ 3413767 (-) False nde1
XR_004579379.1 other downstream 290516 3399745 ~ 3413767 (-) False nde1
XR_003402972.1 other downstream 547574 3156617 ~ 3156709 (-) True LOC113528657
XR_003402970.1 other downstream 548853 3155296 ~ 3155430 (-) True LOC113528655
TU243007 other upstream 301522 4040481 ~ 4044575 (-) True G205173
XR_004579349.1 other upstream 353954 4092913 ~ 4117643 (-) False dcaf7
XR_004579368.1 other upstream 983458 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 989135 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 1350377 5089336 ~ 5091922 (-) False G205633

Expression Profile