RNA id: XM_034309833.1


Basic Information

Item Value
RNA id XM_034309833.1
length 7949
RNA type mRNA
GC content 0.47
exon number 5
gene id kcnc3a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3768855 ~ 3865849 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagagagagagagagagagagagaggagagagggaggggacaGAACTGACCACTATATTACTCTAAGGATTACACTGCGCGTCGGAAAGCCCAAAAAttgacccaaacacacacctcgACAGGAATAAAGAGGCAAAAGGAGCAAATGCGCACGGACCGCAGCTACACACCCGCATCCACCGCACTCTTTTGCGTGTTTTCCTCAgctatctgttttttttgttttttatttttttcttaatgacattttgtcatttttggagCGGGTGACGACCAGAAGaagagagtgaaaagaaaaaaaggcagacagacagagagagagagagagagagagagagagagaggagagaaacacCGACAGCTCGACGGAGGTGCTGTTGGGTCGCGCGCGCTCGCTTGGGCTGGATGGACTGCACCTTTCCGGGAAACTAAAGCAGggacagaaatagaaatatacaGGCTCTACAAAGCCAGAATTAACCTGAGACCTGTTtcgcatttattcatttattttggttatttatttatttatttatatagatatatattttttgcagacATTTGTTAAAGAGGCAACACAGAAGACCAGGTGCGTTTAGTAGCTTAAACACAGCAATGCGTCCAGTCTCAGGCGTGCACATCTTGTGATCTGACtccagtttttttccccctcattaaGAAATTAGCCACATTCCTCCGCCTGGTCGGTTCGCGCGCGCGTGTTCATGTGTGCGTTGATTAACGCGCGCGCCACGCACGCACCGCATCCACACGAACCGAGCCAGACCCGACGCGAgcTCCTCCCCCTCCCCGTCTTTCTCTCCCCGccccctccacctcctcctctatGCTCAGCTCGGTGTGCGTCTCCTCTTTCAGAGGGCGCAAGGGTGGCAGCAAGTCGTGCGCCAAAGCATGCGCGAGCGCCGACATGACTTGCCCGTCGGACAGCGAGCGCATCGTGATCAACTGCGGCGGCGTGCGGCACGAGACCTACCGCAGCACGCTCCGCACGCTGCCCGGCACGCGCCTCTCCTGGCTCACCGAGCCCGACGCGTGCAGTAACTTCGACTACGACCCCAAGTCGGACGAGTTCTTCTTCGACCGGCACCCGAGCACGTTCGCCTTCATCCTCAACTACTACCGCACCGGCAAGCTGCACTGTCCCGGCGATGTGTGCGGCCCGCTCTTCGAGGAGGAGCTCGCCTTCTGGGGCATCGACGAGACGGACGTGGAGGCGTGCTGCTGGATGAACTACCGGCAGCACCGCGACGCCGAGGAGGCGCTCGACAGCTTCGAGACGCCCGAGCCGGACGCGCCGGAGGACGAGGCTGCGGCGCTGGCCGGTGGCGGCGGAGGGGGCGGGGCCGACGGAGACCTCAAGCGGCTCTGCCTGCACGAGGACGGCGGCAAGCCGAGCTGGTGGAGCGTGTGGCAGCCGCGCGTCTGGGCGCTCTTCGAGGACCCGTACTCGTCCAAATACGCGCGGTACGTGGCGTTCGGCTCActcttcttcatcctcatctCCATCTCGACGTTCTGCCTGGAGACGCATGAGGCGTTCAACACCATCTACAACCGTACAGAGAATGTGACGGTGGGCAACGTGACGCGTGAGGAAGTGGTGTTCGAGGTGGTGACGGACAGCTGGCTGACGTACGTGGAAGGCGTGTGCGTAATATGGTTCACCATCGAGGTGTTCACGCGTGTCATCTTCTGCCCCGACAAGGCCGAGTTCTTCAAGAGCTCGCTCAACATCATTGACTTCGTGGCCATCCTGCCCTTCTACCTGGAGGTGGCGCTCAGCGGCCTCTCGTCCAAGGCTGCCAAGGACGTGCTGGGCTTCCTGCGTGTCGTCCGCTTTGTCCGGATCTTGAGGATCTTCAAGCTCACTCGCCATTTCGTCGGGCTCCGCGTGCTGGGGCACACTCTGCGTGCCAGCACCAACGAGTTCCTGCTCCTAATCATCTTCCTGGCTCTCGGGGTGCTCATCTTCGCCACCATGATTTACTACGCCGAGAGGATCGGCGCTGACCCCGGCGACCCCACGGCCAGCGCCCACACCTCATTCAAGAACATCCCTATTGGCTTCTGGTGGGCCGTGGTCACCATGACTACGCTGGGCTATGGCGACATGTATCCTGAGACGTGGTCGGGCATGTTGGTTGGCGCTCTGTGTGCCCTGGCTGGTGTGCTCACCATCGCTATGCCAGTGCCTGTCATCGTCAACAACTTCGGCATGTACTACTCACTGGCCATGGCCAAGCAGAAGCTGCCcaagaagaagaataaacacaTCCCACGAGCCCCGCAGCCTGGCTCGCCCAATTACTGCAAGCCCGATGCTCTCGCCATGGCCACAGCCTCGCCGCACAGGATCATGGGTAATGTGCTGGGCGGCAGCATAGCAGGGGACTGCCCCCTGGCGCAGGAAGAGATCATCGAGATCAACagagcagactCGAAGCAGAACGGGGACGCGGCTAACGCAGCCCTGGCTAACGAGGACTGCCCCACAATAGACCAGGTGCTGGGGCCGGACGACAGGAGTCCGGCAACGGGGACCGGGCGCTACCCGCACGACCGCGCCTGCTTCCTGCTCAGCGCTGGCGAGTTCCGCACCACCGACAGCAATGTCAGGAAAGgagggaacGTTGACTGGATGCTGGACTGACAAGCGGTCAGtaggagaagaaaaataaagacttaATGCTctaagtgacagagagagagagagagagagagagagagagatgtatgtGTACCTGGAGATATTTTGATGCCAGATCTAAGCCTGTCTCTACACTGTTAATGAAATCTTCACTGCAATGACGGCTTAGGAATTTTTTTCACCccgttttttttcctcctctgtgtGAGCGAATGTACAGAAACTGTCAGTAGCACTCACTTTAACTGTGATCCTGCAACAGACGGTCTTCATCCACTGTTCTAGTTAAACAGAGttatatgaatattatttttgtatttcaataCATTTTAGGCGTTActgttatttaatatgtatagaGAATGCTTTGTATAATTTTACATTCACCCTTgtctggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccctcctTTTATTTCGTGGTGCCTGCCTTACTCATCTCTCTTCCCTTTCCTTTCcccacactcaaacacacactcagtgctaGAATGAGTCAAAATGTGGAAGTAATAGTAGAAAGCGTGACTAAATCACTCAGAAATGAATGTGTACGAATATAAGGTTTTATGCACTGAATATTCCCTGCGCATGCTTTAACAAGATCTGCAGAAATAGTGGATCTTCCTTATATGCAATGTTTTATGCACATGATTATAATGTAGCTGTGCTTGAACTGCAGACTAAAAGAGAGCCGAGCAATAAGAGATGAATCACAATGCCGCAGAGGTGACTTATTTCTGGTGGTTATTTTTGAATAAGGTGTGGCCACGAGATAATATTTCAAGGCGACAAGCTAAATAAAAAGTGGTCACAAATTATGTTCAGGCCACAAGATTATATGTAAAGGCCAAGATATGATATTTCAAGACCACAAACTAAGCATCTCATGCCCACAGATTATTATCTAAAAGGTGTCCAAAAGGTACCAAAATCATGACCACACATTGTGTAACTTAAGCATGTGTCTTAATATGGCTCAATAGATCATTATTTGGCAGGAACAGGCACAAAAAAGTTTATTCAATTTGAGAATTGGCTTAAGGAGACATGGGGAAATGTCAGTGACTGCAGTATGCCTTTATTCATCATTCCAGTACTGAAATAAAGTGTAGTAATATCAAACATCTCCATGTTTGCTTATGTTCCTGTGGCCACAATAGTCAAATTCAATTGATTTGAAAATACAACAGCTGCTACAAAATATTAAACGCAATAGTAAAATACTTAATTTATTGTCTTGTAGCCTTAATTTACTATCTAATGGCCATAGTATATTATCTTTCGGCctcaatttattatattgtgtaatcaATGTACTATCTCGAGTCCTTGATATATTGTTTTGTGGCCTCAATATATCTCATGACCTCAATATACTTTCTCATGGCCACAATGTATTATCTTGTGgccaaaatatattatttcatatcCTCGAAAAATTATCTCACAGCTttgatatattttctttatgGCCTCAGTGTATATCATGGTCTCAATTTATTGTTTTGTGGCCTTAGTATATTCTCTTGTGGCCACAATATATTATCTTGTAGTCCTAATTTGTTATCTCGTGTccttgctatatatatatatcttgtgGCCAcaatatacactgctcaaaaaaattaagggAACACTTAAATCACACATTGGATCTTGATGAACGAAATCTTCAAGtagaaaatctttatttatatacgtAGGCCAAAGTCATCAGCACATTGAGGGCTGGATTCAAGATCACAccaaaaatcaaagtgaaaaattgAAATTACAGGCTGATCCAACTTGCTGATCCAACTTACCAATTATGGCAACTCATAATGTAAGTCAGTAGTGTGTATGGCCCCCATGTATCCTGTATGCACTCCCGACAACGTCTGGGCATGCTCCTGATGAGATggcggatggtgtcctgggggaTCTCCTCCCAGACCTGGATCAGGGCATcagtgagctcctggacagtctgtggTGCTACTTGGCGGCTTAGGATGCTCCAATACATAACATCCCAGAGGTTCTCAATTAGATTCAGGTCTCGGGAACGTGAGGGGCAGTCAGTGGCATTCATCAATGCCTTCATCATCCAGAAACTGCCTACATGAGGTCGGGCATTGTCATGCATCAGGAGAAACCCAGGGCCCACTGCACCAGTGCAAGGTCTGACAGTGGCTCTGAGGATTTCATCCCAGTACCTAACAGCAGTAAGGGTACCGTTGGCTAACGTGGAAGTCTGTGCGACCCTCCAAGGAtattcctccccagaccatcactgacccattgccaaaccggtcatgctggatgatgttgcaggcagcataacgttcccTATCACATCTCCAGACTCTTTCACCTCTGTCACATTTGCTCagtgtgaacctgctctcatccaTGAAGTGAACGGGGCGCCAATGGTGGACCTAccaattctggtgttctctggcaaatgccaatcgagctgcATGGTACTGGGCTGTGAGCACAGGTCCCACTAGAGGACATCGGGCCCTCATGGCACCCTCATGGAGTCTGTTTCTGACAGTTTggtcagaaacatgcacaccagtagcctgctggagctcattttgtagggctctgccagtgctcctcctgttcctccttgcacaaaggagcagataccggtcctgctgctGGATTGTTgcccttctacggccctgtccagctctcctcaTGTAACCGCCCGTCTCCCagtatctcctccatgctcttgagactgtgctgggagacacaccaAACCTCCTTGCAATGGCATGTATGGatcctggaggagctggactaCCTGTGCAACTTGATTGGGTTACAGGTACTGCTTCATGCTACAAGTAGTGACAAGGacaataacaaaacataaaactagAGACAAATCAGTCAGGAAGGATAAGGAGAGAGCAATTGTCTGTGGCCACCACCTGCAAAACCATTCCGTTTTTGGGTGTTGTCTTGATGTTGCCTCTCCACTGCACCTGTTGTCACTTTCATTTGTACCAAAGCAGGTGAAACTGATTCACAATCACTTATGCTTCCTAACTGGACAGATTGATATCCCAGAAGTTTCACTGACTTGGtgttacactgtaatgattaaGTGTTCCCttatttttttgagcagtgtgttaTCTCATGGCCTCAGTATATTATCTTGTGGCCATAATATATTATCTCgttgccatttatttattatgttgtgGCCTCACTATATTATCTCATGGTGTCAATGTATTATCTTGTGGTCTTAATGTATTACCTTGCACCCTCAGTATATTATCTCATGGTCTCAATACATTAATTTGTGTccacactttattaaaaaataaccaacCATGTCACCTCAGTGGCTCTATATATTACAGttgcacacaaacaaacaattcaaCACAGACTCGCAATtgcaaattatataataattcacACAAGATAAGAGTCAAGGTGAGACACAGAGTTAGCACTTGTCGCTTTAATTACATGTGTAAAATACCATTAAATCACTCTCGCTCATTAGAATATGTACGAAATCAGCAAGAGATTGTGGTCAACAGTCGAGTCTCTTACTCAGCATTTTATCGGCATAACTACCCttacaaaaaaatcacacaaacttCACGTGAATAattatgtgaatttttttccacataattccattgttatttattttacacactatTCTTTAAAATCCACGTGTAAATTTTTCATACATAGGTCACGTTGTTTTATTTTCCGTATCATTCATCTGATGTCACGTATGTTTACCTGAATTCAGTTTCAGGGCACAACACAGTGAAATGCACGCTCACGTGTTTTTAACGTTTTTACTCATATAATCACACGTGGAAAGGGATGTGAATTTTccataagggttttttttttttttttgctttaagcatacatttaaaaagacaGAACGATGATGAAACACAGGCGTCAGTGGTTCAGCTGATCACATCTACATCACATCTCCTTCCTGTCTTCCCTTTATCACTTCATTCCTTCACTGCTGTGCGTGTGCTGCAAAAAGGGGGCGGTTCCTCGGGCCTACATCAGGTCTCAATGCTGTGTACAGTTTTAAACGATGACTTTGTACTCTATGAatgcatgttgttgtttttttttctcttgcgAGCAATAAGGAATGTCTGTATGATTATTAAGAATGTTTTGATAAGAAAACTGATTTTATCTGAagctgtatgtatgtgtatattcaTATGGGTGTGTACATATGGATGTGTAAATATTCATATGCACATACATATTTATGACTTGCATGATGGAGGtgtttgaaaattatttttttttaccaatcttcttgaaggggcggggcttagtTGTGCATGCTATGACGCTATCAGGTGGCAGAGACCATAATAACTGTAAaatcagggtttttttgtggACTAATGTTGTATTGGGGCATGTCTGAACTCTGTAATCTTTGATTTGTCACTCTGTTAGCGCTCAGTAGCCTTGTGATCATTTCatgattgaatttttttttcatcttttcacaGAGAACTATTCTGAAAGCCCACTGCTTATCAGATATATGCAAAAAGAAGCTGTAACTGTGAAGTAATCTAGAACAGGAAACTCCATTTCTCCCTTCACGTGCACGCTCCCGAATGAACACTCAACCTCTCAATCACCCCCCACCCTTCTCCCTGTAACGATGGTTCcttcctcaccaacctctccAGCCTTATTCcccattttatttgtttttggtcCCATGATTTTTTCCACATATCTTCTTTTCATGCACTAagttctgttctttttttttccctctctcagtACGCAGAACAGATTATTCTGATTTCCTCCGCATGTCAGCGGGCCGTGTTACCACTTGCCGCCCACTGGATGCTCGTAGCGGAACTCGTTCGCAGGCCCTCGAGCATTTAACGAGAGCTAAATTGATGTAGCACACACTATCATGTAGAACAGTAGCAGACGTTTAGTCGTTTTAACGGAGTAAGGATCGATGTTGAGTGTTGATCGAGGAACGTAAACGAACAAGGAAGACGATGACGATGCTACGACTGTCTTCAGCAGTGCATGTTGCCTCGCGTACTACCGGAATGCTTCGTGCTGCATCCTTGTGCATcttgcgattttttttttcctatatgcatttaaaagatttaaaagagCTAGGCTAGGCTCAGGAGAGCAGGAGAAGACAACACTTCATCccaccctaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K04889 KCNC3, KV3.3; potassium voltage-gated channel Shaw-related subfamily C member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242898 lncRNA downstream 446 3768855 ~ 3776450 (-) False kcnc3a
TU242900 lncRNA downstream 446 3768855 ~ 3776450 (-) False kcnc3a
TU242874 lncRNA downstream 37937 3704283 ~ 3738959 (-) True G205063
TU242844 lncRNA downstream 145513 3630694 ~ 3631383 (-) True G205040
TU242834 lncRNA downstream 156777 3617171 ~ 3620119 (-) True G205030
TU242970 lncRNA upstream 83143 3948849 ~ 3957710 (-) False G205145
TU242972 lncRNA upstream 83143 3948849 ~ 3957710 (-) True G205145
TU242974 lncRNA upstream 83143 3948849 ~ 3957710 (-) False G205145
XR_004579371.1 lncRNA upstream 124700 3990406 ~ 3990917 (-) True LOC117598833
TU243002 lncRNA upstream 168190 4033896 ~ 4035077 (-) True G205169
XM_026916909.2 mRNA downstream 15908 3756985 ~ 3760988 (-) True LOC113528389
XM_026916349.2 mRNA downstream 93573 3672980 ~ 3683323 (-) True prkar1aa
XM_026916575.2 mRNA downstream 107594 3658456 ~ 3669302 (-) True rac3a
XM_034310233.1 mRNA downstream 119609 3641953 ~ 3657287 (-) False gps1
XM_034309837.1 mRNA upstream 2873 3868579 ~ 3879880 (-) False zgc:193811
XM_026916275.2 mRNA upstream 2873 3868579 ~ 3879880 (-) True zgc:193811
XM_034309838.1 mRNA upstream 8399 3874105 ~ 3879880 (-) False zgc:193811
XM_034309839.1 mRNA upstream 16422 3882128 ~ 3888471 (-) True lin7b
XM_026916866.2 mRNA upstream 25468 3891174 ~ 3901444 (-) True snrnp70
XR_004579380.1 other downstream 363129 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other downstream 363129 3399745 ~ 3413767 (-) False nde1
XR_004579379.1 other downstream 363129 3399745 ~ 3413767 (-) False nde1
XR_003402972.1 other downstream 620187 3156617 ~ 3156709 (-) True LOC113528657
XR_003402970.1 other downstream 621466 3155296 ~ 3155430 (-) True LOC113528655
TU243007 other upstream 174775 4040481 ~ 4044575 (-) True G205173
XR_004579349.1 other upstream 227207 4092913 ~ 4117643 (-) False dcaf7
XR_004579368.1 other upstream 856711 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 862388 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 1223630 5089336 ~ 5091922 (-) False G205633

Expression Profile