RNA id: TU242972


Basic Information

Item Value
RNA id TU242972
length 1808
lncRNA type inter_gene
GC content 0.50
exon number 8
gene id G205145
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3948849 ~ 3957710 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAGAAGGCATCACAATATaagtttcaatttttttttttatttaagcaaaCAAGTCATTAGACTACCAATCATTTTCCATAACCACAATTGGGCCAAGGCTTACTCTTCTCTCCAGCTGTACCTTGCTCTGATGACAGGTCACGTCCCTTCCTCAAGGCACGTCCCTTCCTCAAGGCACAGCTGCTGCTGCAACAGCCGCACACCTGGTCAGCACCATATGCAGCAGTCCATCTATGCCAGAGAAAGAACAAGCCTTGTGCTCAGCGTCAGCAGGGGCAGATGCTGCTGTTGCCTTCAAGATGCACGCAATGTAGACCAGCTACTGTTCCCTTGCTGAAACCTGAAGGCTTCAATCTGAAATCCCAGCTTAGCTGCTTGAGTCTGGGGCATGAAGTGGGAACTGGACTGTGTAAGCTTGGCATCAAGCAAGCACCTGGAAGGAGTCGCAGTTAGGAATGTTCAGATCAGCTTACTGAAAAAGGCTGAAGGAACCGTACTCACCCATAGTTCTCAATGAAGGAATATCTGGGGACCGTGATTTACATCAGGCACAGcagtggccacacagctgtccACAAGGACACGCGAGGGGCACGTGGTGGAACTGCAGTACTGAGGCCTCAATATTTATAAGCTCGCCCAGGTAGTACTGGTTGGATGGCCTTTCAGATATCCAGTCATCATCATGAGCCTCAAGGAGAAGACAAGAAGCTCCTCAGCAGCTTGGGCAGAAGCATACGGCATCCAAGCAGGCATGATGGCACTGCTACTCACATTGTGGAGTCCTTGGGTAGTGACACTCAATGAAAACCCTAGCACCAGCTCTTCTTAGAATAGGAGTACCACTTAAAGGCACTGAAGCAAGACCAAGGGTGAAGATATAGACCAGCTCATTTGCAGTCACGTCAACTTGCTGTTGCAACCATGCAGTGCCGATTCATAGATAAGGACTTGAGAAGACGCATCCACTCCTTTAGCGGCACAGCCTCCCAGTGTGAAAGCAGCAATGTTGAGGGTTGGACCAGCTCCAAACAGGTCTTTCCTCACCTCTACATACACTGCAGTCTCATTACACCTTGCTGCAATACCCTGGGTAAGAACAGGATCAGACTGCCTTACAAAGTGCACAGGTGTTGGGGGCGTCGGGATTTGTGGTGCTGCTGGAAAACGCCAAGTCAGTTTCTTCACTGGTCTCTGCATTACTTGCTGGTCTTGAGCATCTGAAGGATCTTGAAGCCGCAGTCCAAGTGGGGCTACTGCAGGGCTTCGAGCTTGGGAAGGACTTTGCATCCATTGAGAAGGAAACCCAGCACTCGTTTGCAGTGAAGACTGCCCTGGCTTGTTAGGTTGAAGTCCAGCAGgagcctgaagatcccccaagCTCACCAACTGTGCTGTTGACAGCCCAACTGCAAATAGCAGCACACTAAATCCCACTTGGTTGAAACCCATTGTTGTTAACAGACAATTGTGAGCATCTGAAGGATCTTGAAGCCGCAGTCCAAGTGGGGCTACTGCAGGGCTTCGAGCTTGGGAAGGACTTTGCATCCATTGAGAAGGAAACCCAGCACTCATTTGCAGTGAAGACTGCCCTGGCTTGTTAGGTTGAAGTCCAGCAGgagcctgaagatcccccaagCTCACCAACTGTGCTGTTGACAGCCCAACTGCAAATAGCAGCAGTGCACTAAGCCCCACTTGGTTGAAACCCATTGTTGTTAACAGACAATTGCGAGCATACTGATACTGCCAGAGCACCTCCTATTTAAGCAAGTAATTCTACTCTTGACAATCACTTCAACCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242898 lncRNA downstream 172399 3768855 ~ 3776450 (-) False kcnc3a
TU242900 lncRNA downstream 172399 3768855 ~ 3776450 (-) False kcnc3a
TU242874 lncRNA downstream 209890 3704283 ~ 3738959 (-) True G205063
TU242844 lncRNA downstream 317466 3630694 ~ 3631383 (-) True G205040
TU242834 lncRNA downstream 328730 3617171 ~ 3620119 (-) True G205030
XR_004579371.1 lncRNA upstream 32696 3990406 ~ 3990917 (-) True LOC117598833
TU243002 lncRNA upstream 76186 4033896 ~ 4035077 (-) True G205169
TU242998 lncRNA upstream 144646 4102356 ~ 4104225 (-) True G205165
TU242986 lncRNA upstream 171431 4129141 ~ 4131967 (-) True G205155
TU243049 lncRNA upstream 248390 4206100 ~ 4206299 (-) True G205211
XM_034310036.1 mRNA downstream 16029 3917672 ~ 3932820 (-) False strada
XM_026916870.2 mRNA downstream 16029 3917672 ~ 3932820 (-) False strada
XM_026916868.2 mRNA downstream 16029 3917672 ~ 3932820 (-) True strada
XM_034310037.1 mRNA downstream 16036 3917672 ~ 3932813 (-) False strada
XM_034310039.1 mRNA downstream 41422 3904787 ~ 3907427 (-) True pex11a
XM_034309824.1 mRNA upstream 152123 4109833 ~ 4117643 (-) True dcaf7
XM_034310221.1 mRNA upstream 194349 4152059 ~ 4192591 (-) False mylk5
XM_034310219.1 mRNA upstream 194349 4152059 ~ 4191953 (-) False mylk5
XM_026916960.2 mRNA upstream 194349 4152059 ~ 4191952 (-) True mylk5
XM_034310220.1 mRNA upstream 194349 4152059 ~ 4189551 (-) False mylk5
XR_004579380.1 other downstream 535082 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other downstream 535082 3399745 ~ 3413767 (-) False nde1
XR_004579379.1 other downstream 535082 3399745 ~ 3413767 (-) False nde1
XR_003402972.1 other downstream 792140 3156617 ~ 3156709 (-) True LOC113528657
XR_003402970.1 other downstream 793419 3155296 ~ 3155430 (-) True LOC113528655
TU243007 other upstream 82771 4040481 ~ 4044575 (-) True G205173
XR_004579349.1 other upstream 135203 4092913 ~ 4117643 (-) False dcaf7
XR_004579368.1 other upstream 764707 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 770384 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 1131626 5089336 ~ 5091922 (-) False G205633

Expression Profile