RNA id: TU243135


Basic Information

Item Value
RNA id TU243135
length 2400
lncRNA type intronic
GC content 0.33
exon number 3
gene id G205291
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4505198 ~ 4507712 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacactatgtattatatatatatatatataattatcaaTATGATTAACACAATTTTCATAGTTATTCAAGCATATTAGAGACTGCACGATACCAGTTTTTCTATTCCGATACCGATACTGAAATCTTGAGTAGCCGATATCAGCcgatatatgtttaaaaaaaaatactactaagatttaaaatggttttatagctagaaaaaaacacaacttgcaCAAAACGGCagcttttttaatttcagttaaaatcCAGTTTATTCAGTTCACAAACAAATCGCctacattgcaaatataatacttaatgtataaagtatataaatatcataaaatcaatcctaacaataaatataaacacgtctctttatatgtaaacatttccggCTCCAGATccaatttcattattttctatttgttacaggatcagatcgaattcattttttttctcagatatcCGATCCACCGTTATTTGCTGATATTGACCCGATGGTGGTCCTGGGTATTGGATCGTTGCCATCTCTATAacataattattacaattttttcatttatctgTATCAATACAGATTagataaaaattttattattaggaATAGTCAAATTAACTGGgtctttaaaatataaaagcaataaaactggATTGCAAAAATAAACCAGTTTGATCCAAAACTAttctaatgaatgaatgaatcaaacaagacatgttttattccttttataccacagcaatataaCGGCActgattgcaattttttttaaattaaagaacgacttcatactttttgtccatttatagttactttcaaatgtttaatgtggaatatcacttatgttatagaagCTGTAAACAGTCCTTCTGTCACcaaggcagtttttttttcctctctttttttggaGTTTTGAACTGTAGAGTCTGTGGTCTGTTGTTTTGCCATCTAGAAGCTCTTAATGATCGATAGCACATGCATAATGGAAAACGCTTAAGTATCatgataattaataatcaataacGCAAGCTTAGTCATTTATAATGAGGTAACAGTTTTGGTAAAAGCCTGTACGATGACAGTCTTATAACGACAATAATAATTGTTCAGGTTGTTTAGCAACTCCAGTTTTATTGTACTTGTTCATTTGATCtttattaatctttaaataaaaaataagcttGCTTCTTATAAGacacattaaaggtgcaatagccgattttttttattcctttctcgTATAATAACCTGGATGATATAAAGAATGTGAttaaaaactaacaaacaatgTATTAAGCTCCTTAAGGTGCTGAGAAAAACCAGTTTGGAAAACTGACGTCAGgtctggaatgcttgtttgtgtttgaacgggcctcctgtcaatcatagtATAGACACTGTACAGGccactgtagatcctgggggcggagctttgtgaacatgtgCGGGAATGGGAGAgtgaaaaatcattaaaatatcaaaCCCACCTAACCATTAGACAACTAAGCTtggaaaaaaagactaattttACCGAATGTACCtttaactggatttttaaatggtatatataaacacaattagACTGGGTTGCATGAATAAACCAGTTTAAATCAGTTTAACTATTAATCCAAAAAGTCTGTTGCTAATCTTAAACCCTGGTTAAACTCAAAACTTAATGATGTGTAAGGTGTGTTtgagcagaaaaacacacatcatgGAGTTCCAGGACTGGAATGAAAGACGAAAGTCTCTTGAACTTGGGAAGAAGGtcgctttttttgttttaaaactacATATAATCGATGCCAGGTTTTCATGCCACTTACTTTAAAAGAGCAGTATTTCCTCAATTTTCCATTTGCTCCAGCTGGACTGagtcagccaagacatgtttttgGTGTCTGAACTTGCTCTTTTTGGGTTtagcactggagctatgaggctaatcttcctaacaaattaaaaaaaagcttacagcaACCCTTAGCCATTATGACAACTGGAAACTTTCCGCCTAGTACCTTCCTACTTCCTGTATAGGAATGTGCTCTGTTCTCTGTCGCTCAAGCACATTCAGTAGTTCAGACTGAAACATTTTCTCAATTTAGGCTAATTTAAACACATACTGCGATTACATGTTGTCCATTTTAGACACAAGTTCAAGTTTCTATGGAGCCCATTCTCACCATCAGCATTACAACATGACAAAATGACCATAAGTCATACAGTTTCAACTACAGCTAACGATATAAACTAATGGCTGTGTCCTGAATTCCATACTAGCACACTAATTAGGATGGTTAAATACTACCTACTCTGTGGTATTTGCACAGTcatctgtcttgaagacttttctgtgtcGGAaacattaaagttacagctttacctctcactgttacaaagccctgacactgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243111 lncRNA downstream 107897 4397073 ~ 4397301 (-) True G205269
TU243108 lncRNA downstream 118450 4386528 ~ 4386748 (-) True G205266
TU243088 lncRNA downstream 148636 4356316 ~ 4356562 (-) True G205246
TU243086 lncRNA downstream 150814 4353485 ~ 4354384 (-) True G205244
TU243064 lncRNA downstream 281065 4223807 ~ 4224133 (-) True G205226
TU243137 lncRNA upstream 7224 4514936 ~ 4515138 (-) True G205293
TU243342 lncRNA upstream 41849 4549561 ~ 4551868 (-) True G205481
TU243345 lncRNA upstream 45585 4553297 ~ 4560422 (-) True G205484
TU243349 lncRNA upstream 191488 4699200 ~ 4700963 (-) True G205488
TU243437 lncRNA upstream 259025 4766737 ~ 4770844 (-) True G205541
XM_034309797.1 mRNA downstream 110669 4359299 ~ 4394529 (-) True LOC113527979
XM_026916492.2 mRNA downstream 271235 4227165 ~ 4233963 (-) True ccdc43
XM_026916491.2 mRNA downstream 291465 4211229 ~ 4213733 (-) True fzd2
XM_026916960.2 mRNA downstream 313246 4152059 ~ 4191952 (-) True mylk5
XM_026916962.2 mRNA upstream 55666 4563378 ~ 4590665 (-) True cntnap1
XM_026917275.2 mRNA upstream 164043 4671755 ~ 4690497 (-) True tubg1
XM_034309940.1 mRNA upstream 214705 4722417 ~ 4734902 (-) True mlx
XM_034309939.1 mRNA upstream 214705 4722417 ~ 4734885 (-) False mlx
XM_034310031.1 mRNA upstream 265967 4773679 ~ 4935981 (-) False si:ch211-278a6.1
XR_004579349.1 other downstream 387555 4092913 ~ 4117643 (-) False dcaf7
TU243007 other downstream 460623 4040481 ~ 4044575 (-) True G205173
XR_004579380.1 other downstream 1091431 3382831 ~ 3413767 (-) False nde1
XR_004579368.1 other upstream 214705 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 220382 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 581624 5089336 ~ 5091922 (-) False G205633
TU244177 other upstream 1247055 5754767 ~ 5756733 (-) True G206236
TU244224 other upstream 1333425 5841137 ~ 5841477 (-) True G206282

Expression Profile