RNA id: TU243164


Basic Information

Item Value
RNA id TU243164
length 5065
lncRNA type sense_over
GC content 0.37
exon number 1
gene id retreg3
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4692477 ~ 4711316 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttaatttatgtgaTTGCTTAAGATTATAAACTACTTAATCATTATTTTGAAACATGTTACAAGACCTGTCGTGTCTTTGAAAAGCACgtgtttaaatatttaggtTCTGCACGTGCATTGctccgttttttttttagctccgTTGCAGTAATTTGGTGAAAGTTTGCATTCATCATAAAGAATGATCTCCCACGGTTTGTAGACAAAATAAACCTACTTTTTTCCCTACTACAAGAAATTTGCTGAGCTTTTACCCATTTTTTTGTGGGCATTGGATGTTAGGTGACGCAGGAAAAATCAGCACTATAAGTGTGTCATCAGTTTACTCCCTTTTGTGTGACCATGTAACACATCTATAAAAGAAATGGGAGCAGATTtaacagcaaaaacacaacCGAGTGATTCTCTTTATGATCGCATATGAATGGGTTGTTCTACTTAGTTCTACTTCAGTAGAACTGCTTGTGAATAGGGATGCATGGATACCGATACTGGTACGGGTCCGATACCATGTTCATGTACTCTGTTACCAATATCCAATACCACATAATGCTATGTGATGTACGCCTAGGGTATGGTCTCGCACTAATAAACAGGTGACACGAAATGACAGTGAGAGACTTTTTTCCGATTAATGATAGCAAGCAAAGTATATGGCGAAAATATCAAGAGGCGGTAGTAGAGCAGTATTGTGTTCTTACAATACATGTagcctgataaaacatctttatgGCTGTGAATTGAGAGCGCACAAAGGTATTCGTGAGCGTGGAGGAAAACTGTCAtgcgtgtctcagtgctcgcagaacggAACTGCTCTCACGTTTCTCTGCACACACGGGTATTCGCGAACGTGGAGCAGTGATACGAGCATGCAGAGAAAGTGACGCTTGTGAGAGCACGTCATTTGTGCGAGCACTGAGACCCTGAGTCACGGTCCGGTTCACGACAGTTTTAACAACCACACTCGCTGATCCAGTTTGGCCGACCTCCCACTCTCTGTTAAAGCTACCGTTTAATCAGCATAACTGTATTAAACTCAGCATGTTTTGCTAGAAACATACGGACACATGGAACTAACATAAATAGAgctaaataaagtgtttacttAATAGTGAAtaggttactcatttcattATCAGTATGGGTATCAATGAATACTGAAAAACATGGACTCATACTCggtctgaaaaaaaatggtattgatgcatccctattTTTAATGACATGATGCTCCAGTttgtttggatttggatttttttgcGGTGCTGGAAGAAGAAGGCGGGTGGTTCAAGCTTTGTCACAACCATCCCGTCTACAAAGCTGATGAGgcgaatgaaaaaaaatcactaacatTGTGATCgctttctgtaacagcagtgaCTTGTGCAAATATATGCCttatagaaaaatgtgtgtgcacctACAGGCAAGCTTCCGTAGCATCTGTGGTCATCGTTTGCTCATCAGTCAGCCCTACTCTTTCAGATACAGGCTTCATACGTTCTTTGAGGAGAGAGACATAATGAGACAGGGTCCTCCTCTGCTTTAAAcatcatattaaatatatacactcaccagccactttattaggaacacctgtacacctggaCAGTCATGCAATTATCCGATCAGCCAGTCACATAGCAGCAGCGTAATTCATAAAATggtgcagatacaggtcaagagcttcggttcatattcacaccaaacatcagaatgggggaaaatgccATGTCAGTCAGTAGCATGGTTGTTGAATATTTCAGAGTCAGCTGATTTtcggattttcacacacaactcttTATACTTAACATAGAATgttgaaaaaacacaaaaaaaacatccactgaggtCCAGTTCAGCGGGTAAAATCACCTTGTcgatgagagagagaatagtcAGACGTGTAGAGTAACTCACAAccattctttacaaccgtggtgagcagaaaagcatctcagagcgCACAATACGTTGAACTTTGAAGTAgacaggctacaacagcaggttCCACTCTGTTCAACCAAGAATGAGAATCTGGACAGATTGGcaaatgattggctgactggataagtgcatgaatgagcaaATGAGCAATTTTGTCAGCCCTAGTTTAAAAACCACAGCTTGTATAGGAAACACGTAACCTTGACAAAAATCAATATCAAACCCAATATCTGAGAAGAACACGGTTATAATGGCGACGTCTCCATCTTACATCTCAAGTCTGTTAACGTATTTCACCCGCAGTCTTAATTAAAACCTCACCTCATGCTGAAGTTTCTCTGTTGAATCTTGAGATGACTTGTGATGAATTGCGGTGTGTGTTAGTAGGAGTAGGAGGCAGTGTGGTGTGGTGCAGTGAtgcttcatttgtttgtttgctgtgttttttttttttgacaatgtGCTTCTGTAGCTCCTGTCATTGTTTTTCATCCTTCTATAGTAGATCTGCAGTATCATGGACTCCTGTTTGATTTTTGCTGTACAAGTGAAATTTGCTGATCTTATACACCATagatgtatatataaatgtagagACCTAGACGGCTCATTATAGCTCATTATGGCTTCTATAGACATTACATGAacatatttgcaaaaaaaaaaaaagaaaatctatctatcagttttttcctgtaacagcttcCAATTTGATTGTTGTGCAAGAAAAATCTCTGATATTAGCTAGTGCGTATAGCTACATTTGCAATCCAGTTCACTCTACAGACATCTAATCGGCAAAGTTCGCTTCCTGAAAACGtgcttttaattaaagaacgacgCGCCGTACCTTCTATCCagttatagttgcatttaaagtacatgtaaacatttaaagttgtggaccATCCTCAGAACAAGTTATCGCTCACGGTATAGTAGCTataacagtcgttccctcaccagcctctcacttttctctttatcttttaataaagttaataataaaagacaaaaaaaaaaaaaaacatgcagcttgacttgaagtgctgacactggagactcctttcataaatgttaattaaacgtcttctccaaaaaataaaagaaaataaataagacaattcatCACCATATGAACAGTtagagtttttatttgtttggtaACACATCTTTAATCCGTTTATAGGGacgtccgccatacaagtccttgtgtatcttgttactatagaaataataatgtattagagtcTGCATATAAATATGAACGACATACAGCCAATAGAAACATAACATTGTCTTTAAAGGCAACTCTTgtattggaggaaaaaaaaaaaaaaagttttacagcCAGAGCAAATTTTGGAGTTACAGTATTAttacaaacatgtttttaatttgtattttcaaGTAATAAAAGTCATTGATGTTTGATACAGAAAAGAAGAGATACTGTACACAcaaatttgaaatgaatttcggctgaagaaaacatgaatgaatCTGTTTTTCCGTCAACTACAGCCATGCAAAAGTACTGACACCGATATAAAAGTGATTATAGAGAAAAGTCGACGATACCCAAAGTGCATCActgtttccaggtgaaagaaaAGAACGCTAAAACCACAGCGTAACGAAGAGATTTTacatttgctttttcttttactcatCTTAATGATGTTTGATTTTGCTTTTCGTTAATGAAATTGAGACTACTTTTCGTCTCTTCGTCTATCCAAACAGCACATGAGTTCCTCTGGCGGCCATGTTTATGTGTAGATGGGCTTATATCTAGATGTAGCACTGAAACATGTGACTTTCATCCCCACCATTATCATTATTCGAAAAAACCTGTctcaagcacttttttttttatgtcatctTTATTAATAGATCAACTCTTCCAcctcaacctttttttttttttcctcgtaaTGCCGATAATATTTCATatccaaaagaaaaatatttacaattcaAACCTCAATGTGAGTCCATGGGAGCCACTTTAACTCGCTTAGCTTTCAGTATGCTGTACTTACTTCCAGTCTAATATGTACATCTATGGTGATATTATCTTTACAGTACACAGTTGCGCATGCTAGTGGAGGATTTATAATCTGTTTTGCaactgatttttaaagaaactgACATGCTGTAACTgacgaggaggaagaggaagcagGTCGCAGCTTGGATGTCCTCTTTCTTCATCTTAACACGTGCATCTTAGGCATGTGCCAATAATCGCTATATTATATATCACGATATTCAGTGCACATGATAAAATAATGACTTAAACCTTGCTTACTATTTAAAAGCACCTGTTTTGGTTAGAATAAATATAACATGGTGTCTCTCCAACTACAGAATAATGTTTGAGCCATGCAGTTGGTTTAAATGCAATATTATGACATTAATGTGAATTAATTAGGCGATTATCGCGTGTTTAATTCTAATATTGGCACATGTCtagtgcatattttattttaatgaataaaaattgatGTCAGCACAAAATCCTGATGtgaaaattgtaattaaaatgatgagatttttaaaaaaaaaaaaaaaaaaaccacatgacGAGTGACGAATGTTATTGGCGTCAGGGCACTTAATCACTTAATCCCGAATAAATGCTGACTGTTTCTTTTCCACGCTGTCGTTTCATGAGGAGAAACATAACTGCTGGTCATTTTGTTCATCAATTTATTCACCTGATGTGAGCCAGAAAGAAATCACTTCACATTGgaatacaaatgaaataatgaaatgatagtttttttttctttgagataaaaaaaaaaaaaaaagatttattatatttgtaaatgttgtgCTGTGTTGAAAAAGTCAATGGTTAAAAAATGTCAAGCAGGAGCAAAATATCAGAATTCAGGCTGCATATATTCACCTCACAACATAGACGACTCGTAAAGAGTCTTTTTCTAGAAAAGAAACAGTAATTTCATAGAATGTGTACTTTATAAAGAAGATGATATTCTCCAGTATATGTCTTGTGTACATCTGATAGTTCTTCTGTTACTCTGTAGATTTTTGATATGTTTTGATGTGCAAGTGAATAAATTCTGAAATTAAAACCTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243159 lncRNA upstream 33216 4671760 ~ 4673029 (+) True G205315
TU243167 lncRNA upstream 35608 4620218 ~ 4670637 (+) False plekhh3
TU243150 lncRNA upstream 142591 4563408 ~ 4563654 (+) True G205306
TU243143 lncRNA upstream 154380 4549561 ~ 4551865 (+) True G205299
TU243147 lncRNA upstream 168090 4537498 ~ 4538155 (+) True G205303
TU243290 lncRNA downstream 183231 4894540 ~ 4955358 (+) False G205436
XR_004579387.1 lncRNA downstream 212605 4923914 ~ 4925682 (+) True LOC117598842
TU243292 lncRNA downstream 225255 4936564 ~ 4997796 (+) True G205436
TU243310 lncRNA downstream 292317 5003626 ~ 5014516 (+) True gosr2
TU243315 lncRNA downstream 368678 5079987 ~ 5081204 (+) True G205454
XM_026916627.2 mRNA upstream 35599 4626493 ~ 4670646 (+) True plekhh3
XM_026916628.2 mRNA upstream 35599 4626493 ~ 4670646 (+) False plekhh3
XM_026916630.2 mRNA upstream 35599 4655361 ~ 4670646 (+) False plekhh3
XM_034310291.1 mRNA upstream 156767 4527593 ~ 4549478 (+) True ezh1
XM_026916490.2 mRNA upstream 480200 4215915 ~ 4226045 (+) False moto
XM_026916473.2 mRNA downstream 1564 4712873 ~ 4721468 (+) False psmc3ip
XM_026916710.2 mRNA downstream 25732 4737041 ~ 4770496 (+) True fmnl1a
XM_026917196.2 mRNA downstream 259513 4970822 ~ 4974830 (+) True LOC113528572
XM_026916160.2 mRNA downstream 270717 4982026 ~ 4991251 (+) True wnt9b
XM_026916876.2 mRNA downstream 292239 5003548 ~ 5011037 (+) False gosr2
TU242670 other upstream 719961 3966758 ~ 3986284 (+) True limd2
TU242671 other upstream 719961 3966758 ~ 3986284 (+) False limd2
TU242672 other upstream 719961 3966758 ~ 3986284 (+) False limd2
TU242673 other upstream 719961 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other upstream 734995 3971179 ~ 3971250 (+) True trnae-cuc_26
XR_003402913.2 other downstream 1564 4712873 ~ 4721468 (+) True psmc3ip
XR_003402967.1 other downstream 378889 5090198 ~ 5090283 (+) True LOC113528651
XR_003402964.1 other downstream 379211 5090520 ~ 5090604 (+) True LOC113528648
XR_003402966.1 other downstream 379523 5090832 ~ 5090916 (+) True LOC113528650
XR_003402965.1 other downstream 379939 5091248 ~ 5091332 (+) True LOC113528649

Expression Profile