RNA id: XM_026916627.2


Basic Information

Item Value
RNA id XM_026916627.2
length 4860
RNA type mRNA
GC content 0.50
exon number 13
gene id plekhh3
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4620218 ~ 4670646 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACAGCGGAGAGAGAGCTCGGCTCTGACACTGGGGGGAGTGGCCTTATTGCACTTTGCTAGTtaaataagcaataaaaatacatatttcttttaatttgcgATGGAAGCTgacagttttgttttctttctcctttgcTAATTGAGTGAATAACGTTATCGGAAGGTTTTCGGAGAGATTTTCGgcatcttgttttattttctcgCTGTGTTCGGACATTTCTACGAAATTATGGCGAAAACAAAACATGTACTTTTGGattttaatgtcaacaaactCGCCTGAAGCCTCACCGTTTCTGGTGCCTACGTTTCCACGGTAACGGAGCGCGCGCCGGGCGGATGTGCGCGCGCCGCCATTTTGCGCACAGGTGCCGCTGTTAAgacgaaacaaaacaaacccgaGTTGCTCGTGCGCGGATTTTGAATGCCTTTGCGGGGAGTTTGCTGGTGGCTGTGCTGCACGCGAGGCTTCCGTTTGTTGGGGCGCGAGCatggagggagagaagaggaggaggaggaagaggaggaggaagagtcCTTCGAGTTGCGCAACAAGGAGGAGTGCACGCGCCGCGCGCCGGGCCAACTGGAAGTGACTCTTTCTCAGCCGTCTCGATCAGCCAATGGCACGCCCAGcctgtCAGGTATGTCAGAGGACAAACTGATAAACGAGGGGAAAGTGAAGATGGAGGACGACCCAGAGGTCCTCGTTAAGGGCTGGCTGCTGCGTGAGGTGCAGGCCGGTTGGATCCGATACAGGAGGTTCTGGTTCACTCTGACCGCAGACTCTCTGGAGTGTTACAGCGGCCCTGAGAAAGACGCTCGCACTGTGGGCATGCTCGTCCTCACCTCACTCTGCTCCGTCCTCTGGCCGGACAAACACACCTACAAAcagacaggttacTGGAGTTTGACTGTGTTTGGGCGGAAACACTGCTACAAGCTCTTCACGAAACACTTTAACGAGGCGGTGCACTGGGCATGTGCAGTACAGAAGGTCATCGACAGCAAAGCACCAGTGGAGACGCCGACTCAGCTCCTCATCCGTGACATAGAGGAGAACAAATTtaaccccgaggtggtggagcacATCTACCAACACAACCCCATCCTGACGTACACACAGAGTCCTCTCTACGCTCCTCTACTTCCTTTCCCCTACGGCAGCCTGGACCACTTAcatctAAGTGGTAAAGGTTACGTGTCTGTGCGAGAGGAAGCCGTCAGACTCTTTAACTGCGTGCAGCAGCTGGAGTTGGAGCGAGAGCCCATCCCTCTGATCCAGGGCGTCCTGCAAACCTGCCTCGACCTCCGACCCCTGAGGGACGAGCTCTACTGCCAGCTCATCAAACAGACCAGCATcgcacacactcgctcacacacgcacacacacacggacacgcAGACGCAGGGCAGTACCCGGCTGCGCTACTGGCAGCTGCTGACCTGCGCGAGCTGCACCTTTCTGCCCAGCAGCCCTGTGCTCCGATACCTGCGCTTCCACCTGAAAAGggtgcagagtgtgtgtgtggactcgGAGGTGGAGAGCTACGCCTCTTTCATCGCCCAGGCTCTGGAGAAAACACGCTGCCGTGAGTGTGTTCCGTCCTGGGAGGAGATCCAGGGCCTGATGACGCGACAGGAGATGGTGTGTACCGTCCACTACCCCGGGCCAGGCTGCTGCAGGATTCCCATCAGCTCACACACTACTGCTAacgaggtggTGAGGAAGGTGGCGGAGCGTCTCGGCCTGCAGCACAGCCGCAACACCTTCGCTCTCTTCGAGCAGAAAGACTCCTGGGAAAGGGCGATCGGGGGCGGCACCATCATCGCCGATGTCATCACCAGGTTTGAAAAtctgtCAGCGAAGGAGTCAGACCCGGAGTGTCAGTGGAGGCTGTGCTTTAAACTCTACTGCCTTCTGGACACAGACAGCATCAGCACAGACAGCATCGAGTACCTGTTCCTGTACGAGCAGtgccaTGAGATGGTGGTGCGAGGTCAGCTGCCCGTGTGTGAGGAGGACCTGCTGTCTCTGGCCGCTCTCAGGCTTCAGGCTCTGCTTGGTGATTACGGATCGTTGGCTCCGTACCCGACGCTCGAGCAGCTGTACCCGGCGCGGGCGCTGGAGAACCGGGCCCTGCTTCCTCCTGCCGAGGCTCCCGGGTGTCCTCCGTTCCCTGCCGGTCTCCTAGGGGCGCTGTGGGGTCAGAAGCGGCGTGACGGACAGGAGCAGAGACAGCGGGCCAGGTTGCGAGACGAGGCCACTGCTCTGTCGACCAGCATCATGGAGCGGTGGAAGTCTCTGTCCGGGTACAGCCGCGCAGACAGCATGGCCGCCTACCTCACCATCGCACGCCAGTGGCCAGGCTTCGGGTGTACGCTCTATGAAGTGGACTTCTATATGAGTTCGAGCGGGAGCTTCTCTCAGCGTCTGTGGCTGGGTGTAGCCGCTTCCTGCGTGTCTCTGTATCGCCCGGGCGAGGCCGAAGCCCTTGAGTCGCTCCCCATCACGCAGATCTGCTCATACGGCGTCTCCGACAGCAACACCTTCACCATCACTGCCACCGACCGCCACCTGCTGTTTCACACCTCCGAGctgacTGAGATCATGCAGCTGATGAATGCCTACTTCAGTGCCACCCGACGCCAGCTGGCCAAGGACGACTGCATCACCATGGAAACCAGCTCCAAGCTCCGCCCCTCCCTGCTGGAACTGCCCTCTCACCCGGTTTGAAGAGACACGCAGCCGATTCTAAAGAGGCCCCCATCCAATCGCTCCGCCCACTCTGTCCAAGACGTAGAGACTCCATCCGTCCTGAGATGCACGGccgagagatgagagagagcaGGACAGGATGGACAACGGCCAAAGATCCCAGAATTCCGAGCACGCTCCTGGCCTGGCTGATAAAAAGCCTGAGAGAAACTCAGCTGAATACGCTGAAGAcaatgagaaaacacacacaaacacacactgtgacacacagACACGTCCATTTTGGACATTTTATGGACGTTTCCTTTCAGCAGAGAACTTAAACCGCCCTACTTCATACTCCCTACGAACtacaaagtgcattatgggatttaTGGACACTtgccacagtgcattatgggatttcaCAACTGCACTTCAGACTCATACAATGacaagtgcactatatagtggaTAGGGTGCGATTTGAGACACGCAGCTAGTGTATGTGTGGGTGCACGTGCAAACcaaagcgtttttttttttttcttttcttttctttttcaaacaaaccaTCTCCGTTATATATAGAGAGGCAGCCTTTTTGGATCTCGGAAATGTGATTTCTGGAGGTCCGCTTCATTGTGGCTCTTCTTTGCTGAGATGATGGAGGCCTTAGAGCAGGTGTCACCAGAAATCAGTTTCATCGTCCCGTAAAGAAATGCAAAATTTCCCACACAGTGTCATTTGCTGTCTGAAGCTTGCTtccggtaaaaaaaaaaaaaagaaaaatccaggcCTCCCTACTCGACTCATATGAAGGCTTATGTCAGGCATATGTAGGATTTCTGTAGGATTAATAGCTCAcatgcagtgcagtgcataaccTTACCTGAATAATCTTAGCATCTTCTGAGATtgtcattttgctttttataatatgtataatgttactttgttttttatttatggatgtctatctgtatgttttttttattacttgttttttATATATCCTTAAGAAGTGTATaagtgtattttattcctttattaatCACACAGAGCCCGGGAATAATCAGTCCCGATGTACATAGTTCGTATATTAACCCGTATCGAGAGGGCTACCCAAAAAGGCAACGCGCATCCAGATCGCAAGAAACGCCGCAATCATCAGCGTTTATTTCGACACGGACCAAATGTATGCGGGTGATCAGAACAGATCGGCGTTTTAGTCCTAAAATAACCACCGAACTCACACGTTAAGCTCGAGTCGAGTTCGATTGTTCGTTCAGCTGTGCCTCAGAGAGACTTGCCACCTGTgcctgtaacaaaaaaaaaaaaaaactgaacatatAGTCAAGTCTGAACATCTGAGTCCACTCCCAAgaactgctattttttttcaaagacagaataaaaaatcaatatttcttAATAATACGCTTCAAAATCAGCTTATGGATGATAACATATACTAAACCGAGTCATGTCTTACCTGAAGAGCATCACACTTCATACCTGACAATGAAAACAAAGTGCCAACAAAATCACCTAGTGCCatattagagagaaaaaaaattgtttttaacattcactaaaaaaaaaacaaatagaaaaattaaaactagTGAGCGTTCAAAAATTAGTGACGATATCAAAGTGtattgtgatgtaatttatcgCAATATTATCACCATTAGTGTCATAGCGCCCAGCCCTAGTTATTAGTCATCATGATCTGTAATTCTGTACAAATCTAGTTCTGCTAATTGCTGAAATAAGAACAGTTCTTgctgtaattaattttattaatttttttttttggacaggaCTCGTGAGTGTCTGCAAGTcgtttttatttcctgttatgtGTATAAACGTCGTTCCTTTTCCACAACGTCCCTTTTTTCCCCGTCCAACAGCATCGCCACTCTCCATGCGTCACTTAAGCAGCTGCAGGCAGCTCCGCCCACCGTCTTAAAGCTTCACGCCGCATACGCTAACACAAAGTGTGTTGAGTCGGGATGCTGCACGGTACTGCGCCGTGTTGCGCGTCTGTAGCCAGTTGCACTATTGTCTGTACAGCTAACGTGAATGTGCAATAATAAAGAATGATGGTAGATACTGTatgtgattaaataataaaggcAGCACCATTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243150 lncRNA upstream 62839 4563408 ~ 4563654 (+) True G205306
TU243143 lncRNA upstream 74628 4549561 ~ 4551865 (+) True G205299
TU243147 lncRNA upstream 88338 4537498 ~ 4538155 (+) True G205303
TU243105 lncRNA upstream 232235 4393925 ~ 4394258 (+) True G205263
TU243092 lncRNA upstream 266119 4359405 ~ 4360374 (+) True G205250
TU243159 lncRNA downstream 1114 4671760 ~ 4673029 (+) True G205315
TU243164 lncRNA downstream 35599 4706245 ~ 4711309 (+) False retreg3
TU243290 lncRNA downstream 223894 4894540 ~ 4955358 (+) False G205436
XR_004579387.1 lncRNA downstream 253268 4923914 ~ 4925682 (+) True LOC117598842
TU243292 lncRNA downstream 265918 4936564 ~ 4997796 (+) True G205436
XM_034310291.1 mRNA upstream 77015 4527593 ~ 4549478 (+) True ezh1
XM_026916489.2 mRNA upstream 400448 4215915 ~ 4226045 (+) True moto
XM_026916490.2 mRNA upstream 400448 4215915 ~ 4226045 (+) False moto
XM_026916776.2 mRNA upstream 495018 4120854 ~ 4131475 (+) True ccdc47
XM_026916773.2 mRNA upstream 521739 4057751 ~ 4104754 (+) True kcnh6a
XM_026916470.2 mRNA downstream 21831 4692477 ~ 4711316 (+) True retreg3
XM_026916473.2 mRNA downstream 42227 4712873 ~ 4721468 (+) False psmc3ip
XM_026916710.2 mRNA downstream 66395 4737041 ~ 4770496 (+) True fmnl1a
XM_026917196.2 mRNA downstream 300176 4970822 ~ 4974830 (+) True LOC113528572
XM_026916160.2 mRNA downstream 311380 4982026 ~ 4991251 (+) True wnt9b
TU242670 other upstream 640209 3966758 ~ 3986284 (+) True limd2
TU242671 other upstream 640209 3966758 ~ 3986284 (+) False limd2
TU242672 other upstream 640209 3966758 ~ 3986284 (+) False limd2
TU242673 other upstream 640209 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other upstream 655243 3971179 ~ 3971250 (+) True trnae-cuc_26
XR_003402913.2 other downstream 42227 4712873 ~ 4721468 (+) True psmc3ip
XR_003402967.1 other downstream 419552 5090198 ~ 5090283 (+) True LOC113528651
XR_003402964.1 other downstream 419874 5090520 ~ 5090604 (+) True LOC113528648
XR_003402966.1 other downstream 420186 5090832 ~ 5090916 (+) True LOC113528650
XR_003402965.1 other downstream 420602 5091248 ~ 5091332 (+) True LOC113528649

Expression Profile