Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU243290 |
| length | 585 |
| lncRNA type | inter_gene |
| GC content | 0.53 |
| exon number | 3 |
| gene id | G205436 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 4894540 ~ 4997796 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU243164 | lncRNA | upstream | 183231 | 4706245 ~ 4711309 (+) | False | retreg3 |
| TU243159 | lncRNA | upstream | 221511 | 4671760 ~ 4673029 (+) | True | G205315 |
| TU243167 | lncRNA | upstream | 223903 | 4620218 ~ 4670637 (+) | False | plekhh3 |
| TU243150 | lncRNA | upstream | 330886 | 4563408 ~ 4563654 (+) | True | G205306 |
| TU243143 | lncRNA | upstream | 342675 | 4549561 ~ 4551865 (+) | True | G205299 |
| TU243310 | lncRNA | downstream | 48268 | 5003626 ~ 5014516 (+) | True | gosr2 |
| TU243315 | lncRNA | downstream | 124629 | 5079987 ~ 5081204 (+) | True | G205454 |
| TU244073 | lncRNA | downstream | 674100 | 5629458 ~ 5629659 (+) | True | G206157 |
| TU244143 | lncRNA | downstream | 780012 | 5735370 ~ 5735607 (+) | True | G206212 |
| TU244156 | lncRNA | downstream | 799494 | 5754852 ~ 5756939 (+) | True | G206221 |
| XM_026916710.2 | mRNA | upstream | 124044 | 4737041 ~ 4770496 (+) | True | fmnl1a |
| XM_026916473.2 | mRNA | upstream | 173072 | 4712873 ~ 4721468 (+) | False | psmc3ip |
| XM_026916470.2 | mRNA | upstream | 183224 | 4692477 ~ 4711316 (+) | True | retreg3 |
| XM_026916627.2 | mRNA | upstream | 223894 | 4626493 ~ 4670646 (+) | True | plekhh3 |
| XM_026916628.2 | mRNA | upstream | 223894 | 4626493 ~ 4670646 (+) | False | plekhh3 |
| XM_026917196.2 | mRNA | downstream | 15464 | 4970822 ~ 4974830 (+) | True | LOC113528572 |
| XM_026916160.2 | mRNA | downstream | 26668 | 4982026 ~ 4991251 (+) | True | wnt9b |
| XM_026916876.2 | mRNA | downstream | 48190 | 5003548 ~ 5011037 (+) | False | gosr2 |
| XM_026916708.2 | mRNA | downstream | 102564 | 5057922 ~ 5078370 (+) | False | map3k14a |
| XM_026916709.2 | mRNA | downstream | 110011 | 5065369 ~ 5078370 (+) | True | map3k14a |
| XR_003402913.2 | other | upstream | 173072 | 4712873 ~ 4721468 (+) | True | psmc3ip |
| TU242670 | other | upstream | 908256 | 3966758 ~ 3986284 (+) | True | limd2 |
| TU242671 | other | upstream | 908256 | 3966758 ~ 3986284 (+) | False | limd2 |
| TU242672 | other | upstream | 908256 | 3966758 ~ 3986284 (+) | False | limd2 |
| TU242673 | other | upstream | 908256 | 3966758 ~ 3986284 (+) | False | limd2 |
| XR_003402967.1 | other | downstream | 134840 | 5090198 ~ 5090283 (+) | True | LOC113528651 |
| XR_003402964.1 | other | downstream | 135162 | 5090520 ~ 5090604 (+) | True | LOC113528648 |
| XR_003402966.1 | other | downstream | 135474 | 5090832 ~ 5090916 (+) | True | LOC113528650 |
| XR_003402965.1 | other | downstream | 135890 | 5091248 ~ 5091332 (+) | True | LOC113528649 |
| TU244082 | other | downstream | 702254 | 5657612 ~ 5660848 (+) | True | G206166 |
