RNA id: XM_026916876.2


Basic Information

Item Value
RNA id XM_026916876.2
length 1276
RNA type mRNA
GC content 0.46
exon number 6
gene id gosr2
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5003548 ~ 5014516 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCATAAACTACTTCCGCGTTTTGCGCCTCTCTACCGGGTCAGAGCAGAGTCCGCTTCTTCCTGTTGACGTGTTCGTATAGATGATGCACTTGGATATGTGAAAGTGACAGAAACGAAAGCGACAAGGAAGAAGTTTCCTTGGGTTTTTTATCGTTTCAGGACTTTCACGGGTCGAGTTCGGTTCAGAAAATGGAGACGCTTTACCACCAGACTAACAAACAAATCCAGGAGATCCAGTCTAACATGGGGCGACTGGAGACAACCGAGCGACAGTCAGTGCACCTGGTTGAAAATGAACTGCAGGCCAGAATCGAGCAGGTCTTCACTCATCTAGAACGACTTGAGATCCTGGCCGGGAAAGAACCACTGAATCGCCGTCAGAATGCCAAACTGCGTGTGGAGCAACTGAAGTATGATGTGCAGCATTTGCAGTCAGCCCTGAGGAACTTCCAGCAGAGACGATACACACGCGAGGCTcaggagagggaaagggaggagCTCATGAGTCGCACTTTCACCACCAATgatgcaGATACCTCCATCCCCATAGATGACACTCTTCAGTTTAATACCAGCCTGCACAGCGCACACAGAGGCATGGACGACCTTCTTGGCTCCGGCGCAAGCATCCTCAATGGCCTCAGAGACCAGAGAAGCACGCTTAAGGGTACCCATAAGAAGATGCTGGACGTGGCCAACATGTTGGGGTTGTCCAACACAGTGATGCGTCTGATTGAGAAACGAGCCACTCAGGATAAGTTCATCATGGTGGGCGGCATGCTGATCACCTGCATAGTCATGTTCCTGGTAGTCAAATACCTGAGCTGAACCTTCTTGCCTCAAATGGACCAAACATTAATATCATGGAGTGATTATATTAATCCAGGTCGGATTACTCCACATTGCCTTCGGGTTAAATCACTCATCCTGTTTGACAACACCTGATTTGATTCCCTGAGCCTAATTTTCCGTGACATAAACTGTTATCATATCGAGTGTTCAACAGgtgtttcacaaaaaaaagaccTCAGCAACTGGAAAAACTGTTCCTTCtctattttttcctctgttaATTCTCAACTTTAATATCCTGTTTAAGGACGATGCTGAACGGAACGGACCCTCTTGATCCCCCAGAATCGTCTGATTTTCTTTCATATTCTTATATGTAAAATTACAAGTACTCTTACAGTAGTCTTAGAAATTACTGAAAGAAACCTGAAGGTAGGAGGGTTATTTGAAATGGACCAACCCAAATACATTCACAGGACTGTA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005795 Golgi stack cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243292 lncRNA upstream 5752 4936564 ~ 4997796 (+) True G205436
TU243290 lncRNA upstream 48190 4894540 ~ 4955358 (+) False G205436
XR_004579387.1 lncRNA upstream 77866 4923914 ~ 4925682 (+) True LOC117598842
TU243164 lncRNA upstream 292239 4706245 ~ 4711309 (+) False retreg3
TU243159 lncRNA upstream 330519 4671760 ~ 4673029 (+) True G205315
TU243315 lncRNA downstream 68950 5079987 ~ 5081204 (+) True G205454
TU244073 lncRNA downstream 618421 5629458 ~ 5629659 (+) True G206157
TU244143 lncRNA downstream 724333 5735370 ~ 5735607 (+) True G206212
TU244156 lncRNA downstream 743815 5754852 ~ 5756939 (+) True G206221
XR_004579445.1 lncRNA downstream 857825 5868862 ~ 5869806 (+) True LOC117599005
XM_026916160.2 mRNA upstream 12297 4982026 ~ 4991251 (+) True wnt9b
XM_026917196.2 mRNA upstream 28718 4970822 ~ 4974830 (+) True LOC113528572
XM_026916710.2 mRNA upstream 233052 4737041 ~ 4770496 (+) True fmnl1a
XM_026916473.2 mRNA upstream 282080 4712873 ~ 4721468 (+) False psmc3ip
XM_026916470.2 mRNA upstream 292232 4692477 ~ 4711316 (+) True retreg3
XM_026916708.2 mRNA downstream 46885 5057922 ~ 5078370 (+) False map3k14a
XM_026916709.2 mRNA downstream 54332 5065369 ~ 5078370 (+) True map3k14a
XM_026917205.2 mRNA downstream 78226 5089263 ~ 5091817 (+) True rps11
XM_026916179.2 mRNA downstream 85285 5096322 ~ 5103874 (+) True hrob
XM_026916897.2 mRNA downstream 97384 5108421 ~ 5626980 (+) False asic2
XR_003402913.2 other upstream 282080 4712873 ~ 4721468 (+) True psmc3ip
TU242671 other upstream 1017264 3966758 ~ 3986284 (+) False limd2
XR_003402967.1 other downstream 79161 5090198 ~ 5090283 (+) True LOC113528651
XR_003402964.1 other downstream 79483 5090520 ~ 5090604 (+) True LOC113528648
XR_003402966.1 other downstream 79795 5090832 ~ 5090916 (+) True LOC113528650
XR_003402965.1 other downstream 80211 5091248 ~ 5091332 (+) True LOC113528649
TU244082 other downstream 646575 5657612 ~ 5660848 (+) True G206166

Expression Profile