RNA id: TU244141


Basic Information

Item Value
RNA id TU244141
length 5936
lncRNA type intronic
GC content 0.39
exon number 3
gene id G206210
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5721634 ~ 5727680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAATTGTACAAatctaaaaatcacatgaaaaaaaataaaataaaaacatgtacaccacatgtgaaaaatgtatgaaaCTGTATGTGTAAAATTCACATGTGAATCATGTTATTATTCCTATGTGAGTGTCATGTGACTGTTCTGCAAGGGTTTGGAGCACATTTGGATGTAAACGAAATGGTTTGTTTAGTGAAACATCTCTTAGTGAACATGATTCAGATTCCTGTTGGATACTGAGTGACATGCTACACTGTAGTACCGAAGAATgcagtatttataaaatgttattaggATTTTGCTTGAACTTCTGCATAATCTCTAAATATCCTGCTTGGTGCTTAGTCCTGCCTGAGTCACAGTGTCACCCTCAAGGCACTGAGATGCTCAGTGAGGTGCTGGTGTGTGACTCACTGCTCTGTTGATGAAACTCTCCTGTTTGTTTCGGATTCTCAGAAATTCGCCGGCGTAAACTTTGATGTCGCAGCTCTGCTACACCTGCGTGTTGCCCTTGGCAAAGTCTATCTGGGTAACTGTATGACAAAACAGCAGTGTCACGAGCAGATTAGTTGTTTGTTCAGGATATAATGAACTGGTTATTGTTATTTCAGCTAAAGTAGATGATCAGTCCTTGATCTGTTCTGGTTAAGCAGATTTCAGTGAAGCAGTGGAGCCAAAAATGTCGACATTTACACATGTAGACAGTTTTCCACTCAATGTAGATGACTAAGCAAGACTTGTTTGGTGTCTGGGGTTTGCTTGTTTCGCTGAACGTTTGTAATTAGTAATAAATCACAGATGGGAGTGTGTTCACGATGTATGCAATGTCATGACACCAAATGACCACAAATCTACATACATGACCATAACATATAGTttgaagaaaaagcacaaaacctcttttccaacaggaaatatataaatataatgtcatACGGATATAACGTTATATGACACGTCAGTTTGGACAGCATGCAGTATATCacctggggttatttctacAGGTTATTTTATTGAACATAATATATGCTGTAATCTTTCCAGACGCATGCATGCTAAGTCTAtaaaaaatactgacataacAGATTAGGACAAGACTAAAATGTCAGACATGACATTACTCACCTCCCTATTTAAAACTAATCCAATTCGAATAGGACTCATGTTACCTAAAAGTGGGTCAAGTTCCCTTTTTTgtcaaactgttcctttaatagaTACGACCTGCTTTATTTATCAGGCGTGACACGTATAtcttcaggtgtgtgtttgtgtatatatacacagctGTCATTTGAGTTGACTGTTCCAAAGGCAATTTTGACATTGAGACACCCTCTTCCAGGAAATGAGGACTTCTCAGACAGAACAGTGACCCAGTCAGGGCAGGTTACTGTGCCACATGTTGGTCTTACCTGCCTCAGGGGGTGATTTTGCTTctaataaagtgtgtataagGGGTGGGTATGAGGGTAAGAGGGAAAAGCAGTCATAAACTTGAAAGCAAGAATAAAAGAACAGCCTTGAGGCTGAAATCTGCCTGTGTCTGGCACCACGTATACCTCCTGGAGAGGAGAGGATAGGAGGAGAGCCATAGACAGAGGAGTGAGGGATGAGAGGAGAGTCTCGGGGGGTTAAAAAGGAGTAAGTGTGAGATAGTGTGAGAcattgagagtgagagagaagacaCAGAGATATGATTGTGAGCAAGACAGGAGGTATGCGAAGGAGGAGTGAGGGAACAAATGGAAACTGGAGAGATCATGGGAAACaatattacatcatttttgTTAGCCAAAGTGTCTTATTTGCTGATAATGGAGAATGGGGATGTGTGATATAGAAGGAAGCATTAACACCATGACTACtggactcactcactcatttgcTCAATTCCACAATTCAGCTTTTTCTTTAGATCAGTTTGTTTTGtggtcagaaaaaaatgcaacataCAGCTATGTTGTTTGTCTTAATACAAAAAAGATTACTTGTTCCTGATGAACAACATGCATTTGTATTGTCCATTTAGTgccttaaatacattttatggaAAGTTTTATCATCCACAACAGAAACGAGACCTTTGTGCCGGAGAACTTTGATGAACTGGCGTCCCATCGAGAGTGTATTCTCGCCTCATGCCCGGTATTCCCAAGAatccttgaccaggataaagtgcttgatgatgatgaatgaatgaatgttatcaGAGAAAATGGTTTACTGGTCAAAATCTGCATAATACTGACAAATTATTAACTGGTAGCTAACAATCATAATATAtcatttttctaataaaaatgcataacttGTAGAGGTTAAAACAGCTTTTGTGAACCAACAAATCACATCCGACTAAATTCCTGACCAATCAAGGAACGTCAGAGTGTACAAACAGTTTGGTGTACTCGAAACCAAGTGACGTGaccaaattaaaccaaattaaaatcaaatgtaaataaaggaTTCAACGTCATAAAAGTCAAACTCCAGAGCAGCAAATAAACTGAACATGAAAACTGTCTCAGGCTCAGAGGAGACGAGGGAGTGCACACTTGAGCCAGAGTGCGTGaggctactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctaagaggattgttgtgtgtgtgttggagtgcaCAGTAATCTAAAGATGGTGGGTTAACGCTAATCTGTGTGCCTGTAGGTTAATAATGCTTTGTTTCAGTAAAGCTCTTTCCATCCACTGcctttttctttcactcacGTATAAATATCAATCGAAACTGGCAATTAATCAATCTGAGTTTGTTTAGTCTGAgtttcttttctccctcttagtgattcagtgtttattaataaGGCGTATTGCCGGTGTATTTGTTCATCACTTGTTTCTTGTCCTcaattccctctctctctctcattctcttagAGTCACTCCCTTTCTCGCTCCCTTTTCTGTTCTATTGGATTACTGACCATAAATCCGCCTCCCTAATTGGTAGCCATGTGCTAGCCATTCTTTAATAGGATatgacagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcttccgGGTCCCACTGAACAAGTGCTCTTCCTGGGGGCCATCTGGTAGAGGAAATATGAAGGAAGTAGGGAGAGATATTACGATGAACTGAGGGAGGAGGAGATATAAATAGCTATTAGACATGATAATTCAGCTCATttagaaaacaggaaacagagcTTTCTTTCATATGTTGTATTAAAATCTTATATTCTGTTCAACACATCTCTGAAACAATATCAAAATCCTTGTCAGAGTAATGTAGACAAAATAATATAGACCATATAATCTGGAAATACAATTATAACCTCAATAAACAGTAGGAAATTGTGGCAATCGTAAGTCTAAAGCACCTTGTCGAATGATATTCACTTATGATTGATACACTTATGATCTATATATCAGATGGATAAAAAGAGAAATTTGGGGCTTTGATACTACCCGTATGAACTCCCAGGACCTGTCAGTGAGTCCATATTCCTCATTTTCATTACTGCTATTCGTTTCGCTATAATTACTAAAAAATAAGCTTGAcgaatatatttacattaaggGTGTAACACACTGCCACAGTCTGtaattgtatctgtatttgtttagtactccaaatatttgtatttgtattcatattcagtttcaACTGGTAATGGGCGTGGCCTAGACCGGAGATTGTCTTGGAATTGACactgaaaaatactgaaaaaaaaacaagactgttggaaaaaaaagaataattttcaTTTGCGaattataacaacaaacagcaatttgcagaacataactttattcacCTCCTGAACCAGACACACTGTGGAACTTTCTCGAAAACGTTCTATCTAATGTGAGTCAGTAAGCAAACTTACTATGTTTCTAAACAGCAGTGCGTTTCCAAGATCTTGGAACTGTTGTTTGACAATAATAGCCATCTTCGACAGATTTACTTTAGGTCTTGGCTTTACTTTCTAGAAggatcagaaaagttcactggtGCTGCTATGAGTCAACTTGGGGTCCTTTAAgtggcatttcattataatgcctaTATGAATTTCtgggaagattttcttttaataatggtAGAGAATGATTATCtaagaatgacaaaaaacacacagtaaatgcacaatttaatattgttaaaatgaattaaatggtTACTTTTTGGAGACTCCAGCAGAGATATGCTGCCTTGTGAACAGCacatggtctgtgtgtgtggtgatacAGAACTATGGTAGATATGCTTTAGCTCAGTAAATCAGTGTTTATGTCAGGCTACTAAAGCAAACTACTgcataaaaaaagcaaatagtGCATCACCTACTCATAACATGTGAATGAACATGGTCTTATTAACACCACCTTGAACTTGTTTTGGAACAAAGTTGCTGGTGAACAAAGTTGCAAATCCTATTTCCGTAAACTTGGCTATgacaaacaaagggaaagtgtaagtacAGACAGTGTAACTACAATATCCAGAACACTTTCTGTTTTCAGATATATTGCAAACACTGGAAGAGGGAAAAGGTGTTTATGTGGTGgataatgtcagtgttttatagATGCTGCGAATCAGAAATGCCTCAGGTTTTTCTGTATGGTTTTAAGATGAAATTATGGTGGGGATTTTGCAGAGACCTGGCAACCGTGTCCACCCGATTCATAATTGTGTCCTTCAAGCTctgcattaaagtaaaaactgcGGGGTCTTAAATCTGATGCACAGCTTTCCGGcagaaaaaacacataaaaaaacgAATAGTGTGCTACGTATTTTCATGTGTATTTGCATTCGTTTAGAACATTAACCATAACagtatctgttcaatctgaacaGCGTAttcgtatttggttacatccgtAGTTTACGTGCAATTAAAGAAACTGTAAAATCTAGAGTATGACACTGATATGTATTATTCTTAGCCTGCTTAGTTTGTCCCTGTTGCATCTGCTTAACATTATTTTGCGTAAAAATACCCTTAAATGCTTATGGTTCCTTTCATTCTGTTTATTGGGGTCAAACTGCCTAGAGCTTGGGTTAAAGGTGTCAAACCTGGGCATCCTGGCTGTAATGAAAGTCAGAGAAAACACCCATGTCCCCTCCTTGACCAACAGTCCAAAGTCCAGagcaggatgatgatgatgtcatcggGCTATGATAGGCCCTGCAGCCATGGGCTTTCATTCCTGGTTGTCTCTTAACTGATAACTTGGGATATACAGCATCATGTAACAATATGAACTAGATGTGTTGGGGATACTAACTTTATGCTGCTCACTTGCCCAACTCTAGATCAGACGTGTACGGGAGGACTGCTGTGTGCTGCAAAATGTCGAAAAGCAGCACCGAGTCTTGTAGACACAACTCATCACTTTCCTCATCACTTATTGAAAACGTAGTCTGTTAGCTTCACTGtatcaatgattataaaaaTTATGTCTGAGAgtttgccatacaagtccctgtgaacgagttgttactgtagaaacaatatcATATTAGAACAAAAGCATTAAAAGTAATGTGTGATTTATCTTGCAGCTGAAGTCCtctcagagatgctgttatagaaaataaatcaacaccttctgacaaatcaaatttgagaatgcccctgtgctgtggtgtaagagcaCATTATTGTATCACAACCTTACGTTCCATGCTTGTGGGGGCTGAGATGAGGTGGGTGTGATTCTGCCAGGAAAGAATGAAGCAGAGATAGCATTTGGGTGCAAGAGAGTCGGATGAAAAGGCAGGCCTGTCAGAGGTGGGAGTGAAAGCTGTTCATGACCATCAGATACCTGCACTGGCGTCAGACTCTCTCCTTTGATGTCGCGGCCCTTGAGTGCAGAAAGCAACACCCTCAGGGCTCCTCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244080 lncRNA downstream 89715 5631715 ~ 5631919 (-) True G206164
XR_003402932.2 lncRNA downstream 436729 5280730 ~ 5284905 (-) True LOC113528378
TU243533 lncRNA downstream 629712 5089336 ~ 5091922 (-) True G205633
XR_003402949.2 lncRNA upstream 225118 5952798 ~ 5953504 (-) True LOC113528476
XR_003402891.2 lncRNA upstream 459794 6187474 ~ 6189926 (-) True LOC113527891
TU244662 lncRNA upstream 475632 6203312 ~ 6204196 (-) True G206628
TU244696 lncRNA upstream 546136 6273816 ~ 6346363 (-) True G206649
TU244981 lncRNA upstream 918417 6646097 ~ 6647814 (-) False stat5a
XM_026916724.2 mRNA downstream 30362 5657837 ~ 5691272 (-) True mpp3a
XM_026916725.2 mRNA downstream 30362 5657837 ~ 5691272 (-) False mpp3a
XM_026916072.2 mRNA downstream 634611 5081588 ~ 5087023 (-) True baxa
XM_026916112.2 mRNA downstream 681773 5015567 ~ 5039861 (-) False gpatch8
XM_034310090.1 mRNA upstream 29464 5757144 ~ 5777225 (-) False znf281a
XM_034310088.1 mRNA upstream 29464 5757144 ~ 5777225 (-) False znf281a
XM_034310087.1 mRNA upstream 29464 5757144 ~ 5777222 (-) False znf281a
XM_034310085.1 mRNA upstream 29464 5757144 ~ 5777222 (-) False znf281a
XM_034310086.1 mRNA upstream 29464 5757144 ~ 5777222 (-) True znf281a
TU243535 other downstream 629712 5089336 ~ 5091922 (-) False G205633
XR_004579368.1 other downstream 986748 4722417 ~ 4734886 (-) False mlx
TU243400 other downstream 986829 4728094 ~ 4734805 (-) False mlx
XR_004579349.1 other downstream 1603991 4092913 ~ 4117643 (-) False dcaf7
TU243007 other downstream 1677059 4040481 ~ 4044575 (-) True G205173
TU244177 other upstream 27087 5754767 ~ 5756733 (-) True G206236
TU244224 other upstream 113457 5841137 ~ 5841477 (-) True G206282
XR_004579400.1 other upstream 213182 5940862 ~ 5950997 (-) False retsat
XR_004579347.1 other upstream 226053 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other upstream 226053 5953733 ~ 5961050 (-) True LOC113528542

Expression Profile