RNA id: TU244143


Basic Information

Item Value
RNA id TU244143
length 238
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G206212
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5735370 ~ 5735607 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catgactgtgaaCCAGTGCACAAAggaaggtccataaagacatggatgagcgagtttggtgtggaggaacttgactggcctgcacagagtcctgacctcaacccgatagaacacctttgggatgaattagagcggagactgcgagccaggccttctcgaccaacatcagtgcctgacctcacaaatgcgcttctagaagaatggtcaaaaattcccataaacacactcctaaaccttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244073 lncRNA upstream 105711 5629458 ~ 5629659 (+) True G206157
TU243315 lncRNA upstream 654166 5079987 ~ 5081204 (+) True G205454
TU243310 lncRNA upstream 720854 5003626 ~ 5014516 (+) True gosr2
TU243292 lncRNA upstream 737574 4936564 ~ 4997796 (+) True G205436
TU243290 lncRNA upstream 780012 4894540 ~ 4955358 (+) False G205436
TU244156 lncRNA downstream 19245 5754852 ~ 5756939 (+) True G206221
XR_004579445.1 lncRNA downstream 133255 5868862 ~ 5869806 (+) True LOC117599005
TU244231 lncRNA downstream 161778 5897385 ~ 5898200 (+) False tmem98
TU244235 lncRNA downstream 182838 5918445 ~ 5925185 (+) True G206289
TU244238 lncRNA downstream 201641 5937248 ~ 5964081 (+) True G206291
XM_026916897.2 mRNA upstream 108390 5108421 ~ 5626980 (+) False asic2
XM_034310193.1 mRNA upstream 108390 5115179 ~ 5626980 (+) False asic2
XM_026916896.2 mRNA upstream 108390 5494957 ~ 5626980 (+) True asic2
XM_026916179.2 mRNA upstream 631496 5096322 ~ 5103874 (+) True hrob
XM_026917205.2 mRNA upstream 643553 5089263 ~ 5091817 (+) True rps11
XM_026917073.2 mRNA downstream 53114 5788721 ~ 5824200 (+) True kcnj19a
XM_026916323.2 mRNA downstream 153945 5889552 ~ 5897559 (+) True tmem98
XM_026916324.2 mRNA downstream 153976 5889583 ~ 5897559 (+) False tmem98
XM_026917100.2 mRNA downstream 288689 6024296 ~ 6025839 (+) True LOC113528511
XM_026916485.2 mRNA downstream 383886 6119493 ~ 6128811 (+) True zgc:100868
TU244082 other upstream 74522 5657612 ~ 5660848 (+) True G206166
XR_003402965.1 other upstream 644038 5091248 ~ 5091332 (+) True LOC113528649
XR_003402966.1 other upstream 644454 5090832 ~ 5090916 (+) True LOC113528650
XR_003402964.1 other upstream 644766 5090520 ~ 5090604 (+) True LOC113528648
XR_003402967.1 other upstream 645087 5090198 ~ 5090283 (+) True LOC113528651
TU244359 other downstream 395176 6130783 ~ 6134571 (+) True si:ch211-198p11.6
TU244360 other downstream 395176 6130783 ~ 6134571 (+) False si:ch211-198p11.6
XR_004579365.1 other downstream 424727 6160334 ~ 6175366 (+) False mapk3
TU244376 other downstream 454558 6190165 ~ 6194964 (+) True ypel3
TU244415 other downstream 518861 6254468 ~ 6260857 (+) False LOC117598831

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU46482 True 201 lncRNA 0.51 1 NC_048565.1 38598608 ~ 38598808 (-)
tiger barb (Puntius tetrazona) TU46482 True 4135 lncRNA 0.42 3 NC_056702.1 27429130 ~ 27438241 (-)