RNA id: TU244224


Basic Information

Item Value
RNA id TU244224
length 341
RNA type TUCP
GC content 0.47
exon number 1
gene id G206282
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5841137 ~ 5841477 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATGCAACAAGATGCTGGAGATCTTCTACCAGTCTGTGGTGGCGAGTGCCATTTACTGTGCTGTGGTCTGCTGGGGGGGCAGCATCAGTGCCAGGGATACCAGCAGGATTAACAAGCTTATTCGCAAGGCTGGATCTATCATTGGACACAAACTGGAGAcgtttgagtcagtgaggaacaggaggtcactgaacaaactgctctccatcatggacaatccatctcatccactctacaacacactacagagtcagcggagctcattctccaaaagactcattcaaattcgttgtcacagagaacgttacaggagttcattcttACCATTCACAATAACATT

Function

GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:0007498 mesoderm development biological_process
GO:0009888 tissue development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0007389 pattern specification process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244141 lncRNA downstream 113457 5721634 ~ 5727680 (-) True G206210
TU244080 lncRNA downstream 209218 5631715 ~ 5631919 (-) True G206164
XR_003402932.2 lncRNA downstream 556232 5280730 ~ 5284905 (-) True LOC113528378
TU243538 lncRNA downstream 749215 5089336 ~ 5091922 (-) False G205633
XR_003402949.2 lncRNA upstream 111321 5952798 ~ 5953504 (-) True LOC113528476
XR_003402891.2 lncRNA upstream 345997 6187474 ~ 6189926 (-) True LOC113527891
TU244662 lncRNA upstream 361835 6203312 ~ 6204196 (-) True G206628
TU244696 lncRNA upstream 432339 6273816 ~ 6346363 (-) True G206649
TU244981 lncRNA upstream 804620 6646097 ~ 6647814 (-) False stat5a
XM_034310090.1 mRNA downstream 63912 5757144 ~ 5777225 (-) False znf281a
XM_034310088.1 mRNA downstream 63912 5757144 ~ 5777225 (-) False znf281a
XM_034310087.1 mRNA downstream 63915 5757144 ~ 5777222 (-) False znf281a
XM_034310085.1 mRNA downstream 63915 5757144 ~ 5777222 (-) False znf281a
XM_034310086.1 mRNA downstream 63915 5757144 ~ 5777222 (-) True znf281a
XM_034309880.1 mRNA upstream 56083 5897560 ~ 5931876 (-) False svilc
XM_026916322.2 mRNA upstream 56083 5897560 ~ 5931218 (-) False svilc
XM_026916319.2 mRNA upstream 56083 5897560 ~ 5931218 (-) False svilc
XM_026916321.2 mRNA upstream 56083 5897560 ~ 5931218 (-) False svilc
XM_026916320.2 mRNA upstream 56083 5897560 ~ 5931218 (-) False svilc
TU244177 other downstream 84404 5754767 ~ 5756733 (-) True G206236
TU243535 other downstream 749215 5089336 ~ 5091922 (-) False G205633
XR_004579368.1 other downstream 1106251 4722417 ~ 4734886 (-) False mlx
TU243400 other downstream 1106332 4728094 ~ 4734805 (-) False mlx
XR_004579349.1 other downstream 1723494 4092913 ~ 4117643 (-) False dcaf7
XR_004579400.1 other upstream 99385 5940862 ~ 5950997 (-) False retsat
XR_004579347.1 other upstream 112256 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other upstream 112256 5953733 ~ 5961050 (-) True LOC113528542
TU244626 other upstream 285433 6126910 ~ 6194996 (-) True G206604
trnac-gca_16 other upstream 1429429 7270906 ~ 7270977 (-) True trnac-gca_16

Expression Profile