RNA id: TU244235


Basic Information

Item Value
RNA id TU244235
length 2621
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G206289
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5918445 ~ 5925185 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agataacatagtaaacttctttttttgttaaattaagtTGATTTAGTTCTCGTTGcaatatctatatttataatttagtaTTTCAGGAGCAACCTAAGCCCTATTCTGACTAGATTTAGATAATGTAGATAATTTATGTttagataattatattattGGTGTATCTCTAGGATTTTTCTATCATCGAAGTCATTTTTCAGACTGCACAGACCGAGGTTTGGAACGATTACGTAGTCTTTTACGTACCTGTAGACATAACCTGACATGTCGCTAAAGATTCTGTTACATCCTTTGGGAAAAAAGGTTCTCCATCAGTATAGACACTCCGGCACTATTCACTATCTATTTCTTCTGAATAATACTTTAATAAtctgttcaaaaataaaaaaacacagttgtTATATTTGCATAACAAATACAACTTGGATTGGATAAGCTTTCTGCACCAGTGTTCGTTAAGTAATGTTGCCTGAGGACGTCAGTGCTAATAAGCAATTCTTTTGTAAATTACAGAGATGGGAGTGTCTTGTCACACCAGATGTTCCTTGTGTGCTGCATGCACCTCATAGCTTTAATGCCAACTGATTGCCTTGACCTTTATCATAACAGATTTTTGGAGGGTTTGTGGCTGAGCAAGTCTGTGCATTAGTAGGTCACAAGGCGATAACATGTACGTAGGTTTTACTTGTGCTTGGAACTCAATATCGGACCtaaaaacctcaaaaaaaagtcactttgaAACTCaactataatattttttttttctgcgttTTAAACTTGGTTTTGGATTGGTTTCAACAGGAGAACAGCAGTTCATGGAGATTTTCCATAAGACAAATTGCACAaactcttttcccacaggatataacaGAATATTTACCCAAATGTCACTTCAGACAGggtttttacattttgctacagtggtggaaatcagaACTGTCCATTACcaaagtttttacatttattattgagtCCTTGTAGTTATTTGCATGACTGACCGGACCTGAAcaggtttaatccaaactttgctaactcaaaaacaagtaggcctataaataatgtcagcttggaccTATCTAAAGAGTGCTGTTGGTGGAAATTTCAGAAATACAAAGTTTTCTGGCTCTAATAAACACCCAATTTAAATAGTATTCATCACATCAAGCTGTTCATTGGGAGTCTGtagaatctctttttttttttttaaacagttaaaagggTTCCTGGCTATAAAAAGTCTTTCCAAATGTGGAAATAAACaatctgaaacaaaacaaaacaaaaaaaaaaccactaacATTACTCATTCTTATGGGATTAAAATCccagaaatatacagtatctagtattataattattttaccaCACCTCCACATGTAAAATATGACGATATGATATTGATACTATATGTTACCATCATGATACATTTGTCTGAGTATCACAGATATCGTTAGGTGTCTGTGGTTTTATAGCTCCATTATTCCTCACTGTAAAAAGGAActgatttgaaattaaaatctaatttaacTAATTATATCTATcctttaattttcctttttttccttaacATATACTTACATAATGGCTATATTTAAAAGGACTATTTGACACAAACTGATACGGACTGCTGGTGTGTGGCATGTTTGTGGACAGAAGATAGCTTTTACGTGATATGTTTGTGCTATAACTCTAGTAAAGGATAACTCTGGTCGATTGGATTGTACAGTTCTGGATGTGGGGCGACAACTGTGATTAGTTTCTCCTTCATATTCCTTTGGCTGACACGTGGCCACATCAGAGTATGTTTCATcaaaagttaaaagaaaatcaatggGAACACATGCATTTTTGACAGCCACCAAAAACCTACAGTGAACTAGGAAAGCATTCTAACATGCAGTGACATACTCGCAGCTTTCTTGCATCTCGGAGGCCGTGATTGGCTGCGTTCGGAAACGGTCGCTGGTTTTACGGCTCCCGGAAGCCCCCGCTGGCATGTAGCGTCGAGTACGCCGGCGACCGCCATCAGATCCTGCTTTCACTGATGGGTCTCGGACTGCGTCAGAGCCTCCACCTTCTGTTCAGGTTGGTCTTCTCGGATTTAGCATCCCCGTTGTATCCATTGGAGATTTTAAGCTCTTCCTCAGCTGGAGCTTCGCCACGTGCCTTCACATCTCTGCTAACTCCATGTGATTGGCTCATGTCAGAGAGGGTGGAGTCACGGTGTGTGCCACGCCCTTCCCTCTCCCTCTTTGACCAATTAGACGGAAGCTCCTCCTCCCTGTTTCCATAGCGCTCTGCCAGCTCTCGTCTCCTTTCAGCCTTGTAGCGAGCAATCCTCTCGGCTCGGGATTCTGCCGCTGAACTTTCCATCTTCCTGTTTTGTCACTTCCTGTCTAGGGAGCCTAAGCGGGTTCTGCTGTAAGGGCAGGCTGAAGACGCATTTATAAAAGGGGTTCTACTGATCCCGGGGTCTAGTTAAGCTCCAGACTTCAAAGAGGGGAAGAAATGGGAGGAGTCAGGAGAGCAGAAAGTctcgaccaatcagcagctggGAGAGGAGCTGGCTCTGTTAATCAGACAGCCGTCTACCATTGTGGTCACTCCTTTGAGGACGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244231 lncRNA upstream 20245 5897385 ~ 5898200 (+) False tmem98
XR_004579445.1 lncRNA upstream 48639 5868862 ~ 5869806 (+) True LOC117599005
TU244156 lncRNA upstream 161506 5754852 ~ 5756939 (+) True G206221
TU244143 lncRNA upstream 182838 5735370 ~ 5735607 (+) True G206212
TU244073 lncRNA upstream 288786 5629458 ~ 5629659 (+) True G206157
TU244238 lncRNA downstream 12063 5937248 ~ 5964081 (+) True G206291
TU244254 lncRNA downstream 15694 5940879 ~ 5944432 (+) True G206301
TU244306 lncRNA downstream 65422 5990607 ~ 5992072 (+) True G206339
TU244377 lncRNA downstream 254911 6180096 ~ 6194964 (+) False ypel3
TU244409 lncRNA downstream 327159 6252344 ~ 6253065 (+) False LOC117598831
XM_026916323.2 mRNA upstream 20886 5889552 ~ 5897559 (+) True tmem98
XM_026916324.2 mRNA upstream 20886 5889583 ~ 5897559 (+) False tmem98
XM_026917073.2 mRNA upstream 94245 5788721 ~ 5824200 (+) True kcnj19a
XM_026916897.2 mRNA upstream 291465 5108421 ~ 5626980 (+) False asic2
XM_034310193.1 mRNA upstream 291465 5115179 ~ 5626980 (+) False asic2
XM_026917100.2 mRNA downstream 99111 6024296 ~ 6025839 (+) True LOC113528511
XM_026916485.2 mRNA downstream 194308 6119493 ~ 6128811 (+) True zgc:100868
XM_026916487.2 mRNA downstream 194340 6119525 ~ 6128811 (+) False zgc:100868
XM_034310028.1 mRNA downstream 205595 6130780 ~ 6134572 (+) False si:ch211-198p11.6
XM_034310027.1 mRNA downstream 205624 6130809 ~ 6134572 (+) False si:ch211-198p11.6
TU244082 other upstream 257597 5657612 ~ 5660848 (+) True G206166
XR_003402965.1 other upstream 827113 5091248 ~ 5091332 (+) True LOC113528649
XR_003402966.1 other upstream 827529 5090832 ~ 5090916 (+) True LOC113528650
XR_003402964.1 other upstream 827841 5090520 ~ 5090604 (+) True LOC113528648
XR_003402967.1 other upstream 828162 5090198 ~ 5090283 (+) True LOC113528651
TU244359 other downstream 205598 6130783 ~ 6134571 (+) True si:ch211-198p11.6
TU244360 other downstream 205598 6130783 ~ 6134571 (+) False si:ch211-198p11.6
XR_004579365.1 other downstream 235149 6160334 ~ 6175366 (+) False mapk3
TU244376 other downstream 264980 6190165 ~ 6194964 (+) True ypel3
TU244415 other downstream 329283 6254468 ~ 6260857 (+) False LOC117598831

Expression Profile