RNA id: XM_034310027.1


Basic Information

Item Value
RNA id XM_034310027.1
length 1328
RNA type mRNA
GC content 0.40
exon number 4
gene id si:ch211-198p11.6
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6130780 ~ 6134572 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaagaagaaaagcaaaaaaaaaagctcgcTACCTGGTTGCCAGGACAACGCCGATGACCCGCGTTGTTACGTTTCGTGAGAATTGATTTTATGGaaagttgattttatttattgtatcgTTTTATCCACGATAGTAAAACGCCGAGATGATGTCGTTAGCAAGTTAATGCGATGATTATAAGACGGTGGAATACACGAGTGTGATGATGACGGCTGTCCCTTTATGGGCTCTCTCCCTTCCACTCCCTGCCATCATCCTGATCTCCGTTGGACTCTATATGCTGTTTCTTGCGGGTGTCTTATGGTGCCATCACTGTCTCAAGACCCAGTGCAGTCCTCAGTGTACAAACTGCTGCCCGAGTGTATCTCCTTTCGAGTACTGTCACATGTGCGCTCAGTCATGTGACTGTCACCCACCATCTCTTCACACGTGCCTTGACCACTCCTGCCCCACTTCTAATTGTGCCATGTGGGACTGCGCCTGCACCCCTCAGCCTCCTCAGTGTGACTCCATCAACTGCTTATGCTGCGAGATCAAGTTCAAATAGAGACAAAATGGAGGATTTGTACTTCCAAGTACAGAAGGTTTCCGTGTAGACTGAGCCGTGAATGTGGTCATGTGTTCAGAAGTGCTTTTGTGCTTATGTTTACAGCGAGTATGTGCTTCTTTTCTCCATTCGCTGCACATTTCGTTAAACACATCCTTTttttagaatgtctttgtgttttatgtttactGACGTCACATGCTTTTTCAGAGCTAGCATTCAAGTTCTTGCTTTCTGATGAGCTTTAACCTAGCTAGgccattttttcagtgtttactaACAGCAGGTGTGATATATTACTTGTGCTAAAGTTCCCAACATTTATACCAGCATTAAAAATTTACAAACAGAATCATGGCCTTTTCCATATCCAGGCTTTTTAATTTGACCATGTGATTGAGAGTTGTGATAGTTTTCACTGAAGAGAAATGTTATACACTTATTCAGATATGCAGAACTGGGCTGACAAACGGAACCATGGTTTTGGTGGTTCTTGTGGtttggtggtttagtggttttTGACACTTTTTCTCGTCTCTCCATTTGAAATAATAAGCACAAGTCACTTATAGTGGTTCCTGTAATTATACTGCACATGCTGTGGcctgtgtgtttctgctgtAACAGCACTAACACCAGTTTTCTAACCTTTTGTTCTAACACTACATTCTAACTTATGTTAGAAttgattttatagatttttattttatttttgtatttgtgtagaAACATGCTGTATAGTctttaaacaggaaaataaatcttttcatttttaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244306 lncRNA upstream 138737 5990607 ~ 5992072 (+) True G206339
TU244238 lncRNA upstream 166728 5937248 ~ 5964081 (+) True G206291
TU244254 lncRNA upstream 186377 5940879 ~ 5944432 (+) True G206301
TU244235 lncRNA upstream 205624 5918445 ~ 5925185 (+) True G206289
TU244231 lncRNA upstream 232609 5897385 ~ 5898200 (+) False tmem98
TU244377 lncRNA downstream 45524 6180096 ~ 6194964 (+) False ypel3
TU244409 lncRNA downstream 117772 6252344 ~ 6253065 (+) False LOC117598831
TU244542 lncRNA downstream 349107 6483679 ~ 6509229 (+) True G206540
TU244777 lncRNA downstream 416319 6550891 ~ 6551152 (+) True G206722
TU244866 lncRNA downstream 554884 6689456 ~ 6737847 (+) False G206801
XM_026916485.2 mRNA upstream 1998 6119493 ~ 6128811 (+) True zgc:100868
XM_026916487.2 mRNA upstream 1998 6119525 ~ 6128811 (+) False zgc:100868
XM_026917100.2 mRNA upstream 104970 6024296 ~ 6025839 (+) True LOC113528511
XM_026916323.2 mRNA upstream 233250 5889552 ~ 5897559 (+) True tmem98
XM_026917045.2 mRNA downstream 3528 6138100 ~ 6147618 (+) True cln3
XM_034309894.1 mRNA downstream 25762 6160334 ~ 6175151 (+) True mapk3
XM_034310099.1 mRNA downstream 46227 6180799 ~ 6188261 (+) False gdpd3a
XM_026916041.2 mRNA downstream 46229 6180801 ~ 6188261 (+) True gdpd3a
XM_026917286.2 mRNA downstream 55519 6190091 ~ 6194481 (+) False ypel3
TU244082 other upstream 469961 5657612 ~ 5660848 (+) True G206166
XR_003402965.1 other upstream 1039477 5091248 ~ 5091332 (+) True LOC113528649
XR_003402966.1 other upstream 1039893 5090832 ~ 5090916 (+) True LOC113528650
XR_003402964.1 other upstream 1040205 5090520 ~ 5090604 (+) True LOC113528648
XR_003402967.1 other upstream 1040526 5090198 ~ 5090283 (+) True LOC113528651
XR_004579365.1 other downstream 25762 6160334 ~ 6175366 (+) False mapk3
TU244376 other downstream 55593 6190165 ~ 6194964 (+) True ypel3
TU244415 other downstream 119896 6254468 ~ 6260857 (+) False LOC117598831
XR_003402939.2 other downstream 949869 7084441 ~ 7096679 (+) False eftud2
XR_004579327.1 other downstream 973606 7108178 ~ 7115935 (+) False LOC113528597

Expression Profile