RNA id: TU244376


Basic Information

Item Value
RNA id TU244376
length 1358
RNA type TUCP
GC content 0.41
exon number 6
gene id ypel3
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6180096 ~ 6194964 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggtggtggtgttttttttatcgGCTCAGAAACAGAGTTTGGAGGAGGCTGGAAGGCGgaaagtgaagaagaagaagaagaagaagaagaagcagagcGGAGGGACTGTAGTGGCAGacGATTTATCCCTCGCGAGTTGGTGATATTCAGccaTGGTGAAAGAGACTAAAGCCAAAACTTTCCAGGCGTACCTCGACTCCTGTCACCGCCGTTACAGCTGCATCCACTGCCGCGCTCACCTAGCCAACCACGATGAGCTCATCTCCAAGtctttCCAAGGGAGCCAGGGTCGTGCCTATCTGTTCAACTCAGTGGTGAACGTGGGCTGTGGTCCGGCTGAGGAGAGGCTGCTGCTGACTGGACTGCATGCGGTGGCTGATATTTACTGTGAGAACTGTCACACCACTTTGGGCTGGAAATATGAGCAGGCGTTTGAGTTGAGTCAGAAGTATAAGGAGGGAAAGTACATTATCGAACTTTCCCACATGATTAAGGACAATGGCTGGGACTGAAGCTCTCAGTGCCTACCATCAGCatgatacacttttttttatacacattactATTGTTTTTGCATTACTATTGAGCACTTTTTTTCATCCTTGATAACCCAGTTCAtctgttttacatttaaatgtgattGAAAATCCATAAGATCGTAAGTTAAGAGCCTATGCGTTTGAGAGATGTACAAAAACGTTAGGAGCTTAACTTAATCTCCAAAACTTTGCTGGAAATTAAATACACAGCTTTTCAGATCCAGTCCATTTAGTGTAATTTGCAAGTCTGAGCAAAATATTGACCTTTATTGAAAGGTCCAGTgactttttctttccatttttaggTTCAGGTTTAAAAGCACGAGGTAGCAGATGTGATTATTTCGGATAAATGTTTTACGCTGCATTATTTTGTGGTATCTACCACTTGAGGTAtcagttttatttcagtgtgaaGTGCATTGAGAGACTGAAGACAATgtgcaatatgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgcatgtgtttgagctagtgaaagtgtttctcttaatgttgtcatttttcttttaaatgtttcaagGTATAAAGGAATCCTGTGAATGTTAAGGGGTTGTAGCATGTAGGCCGTATGGTGTACATTGTTTCCTGAGACACTTCAGTTACAGCTTAATTTAGAATGTAATTGTGACTTTTTGCTTGaggaaatataaatacagtcatTTGATCATGGTCGAATCTGAAAGTTAGTAGCAAATGTCTGTAAATGCTAAATCATTTAGGTTTATTTTATCAACTGGTGTGTTATTAAATTGTGATGAATATATGTTGACTTTAGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244306 lncRNA upstream 198093 5990607 ~ 5992072 (+) True G206339
TU244238 lncRNA upstream 226084 5937248 ~ 5964081 (+) True G206291
TU244254 lncRNA upstream 245733 5940879 ~ 5944432 (+) True G206301
TU244235 lncRNA upstream 264980 5918445 ~ 5925185 (+) True G206289
TU244231 lncRNA upstream 291965 5897385 ~ 5898200 (+) False tmem98
TU244409 lncRNA downstream 57380 6252344 ~ 6253065 (+) False LOC117598831
TU244542 lncRNA downstream 288715 6483679 ~ 6509229 (+) True G206540
TU244777 lncRNA downstream 355927 6550891 ~ 6551152 (+) True G206722
TU244866 lncRNA downstream 494492 6689456 ~ 6737847 (+) False G206801
TU244904 lncRNA downstream 535721 6730685 ~ 6810353 (+) False G206835
XM_034310099.1 mRNA upstream 1904 6180799 ~ 6188261 (+) False gdpd3a
XM_026916041.2 mRNA upstream 1904 6180801 ~ 6188261 (+) True gdpd3a
XM_034309894.1 mRNA upstream 15014 6160334 ~ 6175151 (+) True mapk3
XM_026917045.2 mRNA upstream 42547 6138100 ~ 6147618 (+) True cln3
XM_034310028.1 mRNA upstream 55593 6130780 ~ 6134572 (+) False si:ch211-198p11.6
XM_026916099.2 mRNA downstream 2676 6197640 ~ 6204209 (+) True LOC113527922
XM_026916615.2 mRNA downstream 10576 6205540 ~ 6212540 (+) True LOC113528207
XM_034310261.1 mRNA downstream 20322 6215286 ~ 6222046 (+) True rabep2
XM_026916520.2 mRNA downstream 20323 6215287 ~ 6222046 (+) False rabep2
XM_034309924.1 mRNA downstream 63216 6258180 ~ 6260664 (+) True LOC117598831
XR_004579365.1 other upstream 14799 6160334 ~ 6175366 (+) False mapk3
TU244359 other upstream 55594 6130783 ~ 6134571 (+) True si:ch211-198p11.6
TU244360 other upstream 55594 6130783 ~ 6134571 (+) False si:ch211-198p11.6
TU244082 other upstream 529317 5657612 ~ 5660848 (+) True G206166
XR_003402965.1 other upstream 1098833 5091248 ~ 5091332 (+) True LOC113528649
TU244415 other downstream 59504 6254468 ~ 6260857 (+) False LOC117598831
XR_003402939.2 other downstream 889477 7084441 ~ 7096679 (+) False eftud2
XR_004579327.1 other downstream 913214 7108178 ~ 7115935 (+) False LOC113528597
trnac-gca_18 other downstream 1077496 7272460 ~ 7272531 (+) True trnac-gca_18
trnac-gca_21 other downstream 1104649 7299613 ~ 7299684 (+) True trnac-gca_21

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU11381 False 288 lncRNA 0.44 2 NC_056699.1 29426098 ~ 29462368 (-)
mexican tetra (Astyanax mexicanus) TU11381 False 1714 TUCP 0.41 5 NC_035898.1 5978814 ~ 5989974 (-)