RNA id: XM_034309924.1


Basic Information

Item Value
RNA id XM_034309924.1
length 2100
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC117598831
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6252344 ~ 6260857 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGTCCGCTGCTGAGTATAAAAGCGAGAATGAAAGCGTGTGTAACAAACAGCCGTGTACGAGCAGTGAGAGCTGCAGCAACGAGGCAGATTTAATAAGAGATAACACTTAATCTTCATATATTTCAGCAGCCTAATAACTACATCTGACAAAACAAGCAAGATGTCCTCTGCTAAAGGAATTGCTATTGGGATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTTCAGCATGGAAAGGTGGAGATCATTGCTAATGACCAGGGAAACAGAACAACACCCAGCTACGTGGCcttcacagacacagagaggctCATTGGAGATGCTGCGAAAAACCAAGTGGCCATGAACCCCAGCAACACAGTGTTTGATGCCAAGAGGCTGATTGGCAGGAAGTTTGACGACCCAGTCGTACAGTCCGACATGAAGCATTGGCCTTTCCAAGTGACCAGCGATGGAGGCAAGCCGAAGGTTCAAGTCGAGTACAAAGGGGAGGAGAAGTCCTTTTACCCTGAAGAGATCTCTTCCATGGTTCTGGTGAAAATGAAGGAAATCGCAGAGGCCTATCTTGGACAGAGGGTAACAAATGCTGTTATTACTGTTCCTGCCTACTTCAATGACTCTCAGAGACAAGCCACTAAAGATGCTGGAGTGATTGCTGGACTGAACGTCCTGAGGATCATCAACGAGCCCACAGCTGCGGCGATCGCCTACGGCCTGGACAAAGGCAAGAAAGGAGAGCGCAATGTCCTGATCTTCGATCTGGGAGGTGGTACCTTCGATGTGTCTATCCTGACCATTGAAGATGGCATCTTTGAAGTGAAAGCCACAGCAGGAGACACTCACTTGGGTGGAGAGGACTTTGACAACCGCCTGGTCAACCACTTCGTGGAGGAGTTCAAGAGGAAGCACAAGAAGGACATCAGCCAGAACAAGCGAGCCCTGAGGAGGCTGCGTACTGCCTGTGAGAGAGCCAAGAGAACCCTATCCTCCAGCTCTCAAGCCAGCATTGAAATCGACTCGCTGTATGAGGGCACTGACTTTTACACTTCTATCACCAGAGCACGCTTTGAAGAGTTGTGTTCAGACCTGTTCAGAGGAACACTAGAGCCGGTGGAGAAAGCCTTGAGAGATGCCAAGATGGACAAGTCCCAGATCCATGAAATTGTCCTGGTTGGAGGTTCTACAAGAATCCCCAAGATCCAAAAACTTCTGCAGGACTTCTTTAATGGACGGGAACTGAACAAAAGCATCAACCCAGACGAGGCGGTAGCTTACGGTGCTGCGGTTCAGGCTGCCATCCTTATGGGCTACACCTCTGGAAATGTCCAGGACCTGTTGCTGCTGGATGTGGCTCCACTGTCGCTGGGCATTGAGACAGCAGGAGGAGTCATGACCACTCTCATCAAACGCAACACCACCATCCCCACCAAGCAGACGCAAGTCTTCAGCACGTACGCAGACAACCAGCCTGGGGTTCTGATCCAGGTgtatgagggagagagagccaTGACCAAAGACAACAACCTACTGGGGAAGTTTGAACTGACGGGCATCCCACCTGCACCGCGTGGAGTTCCTCAGATCGAAGTGACCTTTGACATCGACGCCAACGGCATTCTGAACGTGTCTGCTGTGGACAAAAGCACTGGCAAAGAGAACAAGATCACCATCACCAATGACAAGGGCAGGCTGAGCAAGGAGGAGATTGAGAGGATGGTGCAGGAAGCAGATAAGTACAAAGCAGAGGATGACCGTCAGCGAGAGAAGATTGCAGCCAAGAACTCCCTGGAGTCGTATGCCTTTAACATGAAAAACAGTGTGGAAGATGAAAGCATGAAAGGCAAAATCAGTGAAGAGGACAAGAAGAAAGTGATTGAGAGGTGTAACCAGGCCATTACCTGGCTGGAGAACAACCAGCTGGCTGAAAAGGAGGAGTTCGAACATGAGCTGAAGGAACTGGAGAAAGTCTGCAACCCCATCATCACTAAGCTGTACCAGGGAGGGATGCCAGCTGGAAGCTGTGGAGCTCAGGCACGATCCGCTTCAGGAGCAAACACCCAGGGACCAACTATTGAAgaagtggattaaaaaaaa

Function

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0009408 response to heat biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244409 lncRNA upstream 5115 6252344 ~ 6253065 (+) False LOC117598831
TU244377 lncRNA upstream 63216 6180096 ~ 6194964 (+) False ypel3
TU244306 lncRNA upstream 266108 5990607 ~ 5992072 (+) True G206339
TU244238 lncRNA upstream 294099 5937248 ~ 5964081 (+) True G206291
TU244254 lncRNA upstream 313748 5940879 ~ 5944432 (+) True G206301
TU244542 lncRNA downstream 223015 6483679 ~ 6509229 (+) True G206540
TU244777 lncRNA downstream 290227 6550891 ~ 6551152 (+) True G206722
TU244866 lncRNA downstream 428792 6689456 ~ 6737847 (+) False G206801
TU244904 lncRNA downstream 470021 6730685 ~ 6810353 (+) False G206835
TU244865 lncRNA downstream 473453 6734117 ~ 6735695 (+) True G206801
XM_034310261.1 mRNA upstream 36134 6215286 ~ 6222046 (+) True rabep2
XM_026916520.2 mRNA upstream 36134 6215287 ~ 6222046 (+) False rabep2
XM_026916615.2 mRNA upstream 45640 6205540 ~ 6212540 (+) True LOC113528207
XM_026916099.2 mRNA upstream 53971 6197640 ~ 6204209 (+) True LOC113527922
XM_026917286.2 mRNA upstream 63699 6190091 ~ 6194481 (+) False ypel3
XM_026916971.2 mRNA downstream 3535 6264199 ~ 6267998 (+) True hsd17b1
XM_026916228.2 mRNA downstream 10471 6271135 ~ 6276711 (+) True si:ch73-141c7.1
XM_026917256.2 mRNA downstream 82599 6343263 ~ 6346384 (+) True nkiras2
XM_034309683.1 mRNA downstream 82695 6343359 ~ 6346384 (+) False nkiras2
XM_026917007.2 mRNA downstream 632567 6893231 ~ 6898472 (+) True aspdh
TU244376 other upstream 63216 6190165 ~ 6194964 (+) True ypel3
XR_004579365.1 other upstream 82814 6160334 ~ 6175366 (+) False mapk3
TU244359 other upstream 123609 6130783 ~ 6134571 (+) True si:ch211-198p11.6
TU244360 other upstream 123609 6130783 ~ 6134571 (+) False si:ch211-198p11.6
TU244082 other upstream 597332 5657612 ~ 5660848 (+) True G206166
XR_003402939.2 other downstream 823777 7084441 ~ 7096679 (+) False eftud2
XR_004579327.1 other downstream 847514 7108178 ~ 7115935 (+) False LOC113528597
trnac-gca_18 other downstream 1011796 7272460 ~ 7272531 (+) True trnac-gca_18
trnac-gca_21 other downstream 1038949 7299613 ~ 7299684 (+) True trnac-gca_21
TU245701 other downstream 1592527 7853191 ~ 7853509 (+) True G207480

Expression Profile