RNA id: TU244900


Basic Information

Item Value
RNA id TU244900
length 2311
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G206835
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6730685 ~ 6810353 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgttcatttctttattttcaatccCACAATAACTGacctcagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacattcaagaaGTAATAGACTTAGTTAATCATCTgtattctttcattcttcttttgCCATTTTCATTATAGGATTTTAAAATTCCCTTTCACAATCTACTCTTCCAGTGGGATTAAACTCAAGACTGTTAATCTGCACAACCGAAAATAGTACGTTAACTTATATTTACTAACCAAATCATAGtcattagggttatggttaaTCTGGAACACAGCTAggattaaaatactttttttcttaGCTTACTTATGTTGGCTAAAGATCACATTTGGttaataaaagcagaattaaTATTAAAACTTGGCTACAAATCATTCACAAATGGATTTACAATTATGCATATAACATTTGGAGCAAATATTAACCTTGACATTCGTAGAGCTCTCACTAGTCAGCCTTGTATTGGTCGATTCAGATGACATATCCCTGTCCAAATCGATGCTCAAGCCTGACATCCATGTCATCCTTTTGTGAATGCTTGTAAAAGTCTTTAGGGACTGCCCGGTTCAAATTACAACTGTCCTGAGCAGCGGTTTCTAATTGCAGTCTTTAAGGACGCAAGACTCgtagggtgctttcacatatgcaatGTTTAGTCCAGTTGGATTGAACCATTGGTACGTTTTGTTTGTGTAGGTGAGAACTTAGCATGAGCACTCGGATTGGACCAAATTAACCAGTCCGAGAGAGTCCGAGTGAACTCTGAATTCTGATTCGACTCTAAATCACCTCTGATTCAGTTGAATGCCATGTATTTTATGTTGTGTTTCAGTTTTTTGTAGCCGCTAAACTGAGCCACAAGACACCAACTGAGCCAAATGGTGGAGCTGTagagctgcagaaatgtgaGGTTGCTTGTTGCATgcggcaaataaataaataaataaaataagcactGGATTCAAATATgctttaaactagttatttatgtataattataataatcatttatttagtgctgGCTCCGATTTCTACAGGAACTTGGCAAAggtttgtttatctttttccatagttgtatttctgaccaataaataaagacattttacacaTATGTATTCAGTCCTCAATACCCCCTTTTTTGCTTGTTGGTTCTGTAATTATTTGCATTGTAAAatcaaaaccaaaccaaacagtaACTGAAGCACAAGTGTCAATTTCACTCTTATTCTGATTAACAGACTAAAAGGTGTGAAAGCTCCCTGGTACACCTGATACAATTCACACTTGAGTTGTATCAAGTGTATTAAAACTCAAAAGTGTAAAGACTGCAATTAGAAACAACTGCCTGGAggcagttatatatatattatatatagatagatagatagatagatatgaagAGCTTAATGTAAATGAGTTTGTTCTTCAGTCCAACATGCTTTTGTGCCTTGTCATCATTCATCAGTTTTACTCTTCACTGTCATATCTGTATACATTCATGTAGCCTTCATTTTCAGCTCCAGACTTCCACACATGGTTATATTTTTTCCAGACGAGGGGCTCCTGCTTTGGCTTCATTGACTGGCTTTCTCCCGTGGCTGCACTGAATCCTGGATTACGAGTTGCGAATGTTCAGCTGCCTCGAGCAGAACCTCCTCCGGGCTGCTCAGATTCACCAGCTCGGCTTCCTTCACCTCTACGTCCTCCTTGTCCTCCATTTGCAGCTCTTCAGCTTCATCCTCAGGCTCGGCTTCAGGCTCGGCTTCAGGCTCTGGCTCCTCCTCACCCTCGCGGATCTTCTTCACGTAGAAGGTGAATGGCGGCACTCGGTAAGTGGTGATCTTTGAGCGGGCGTAGACTTTGTTGTCGGATTTGAGCGACTTCTTCACCTTGACACGAGACGCACGAATCTTCTCTTTGCGTTCCTTGTTGGGCCTGATCTTGGTTCCTAGCTTGCCCATCTTCTTCCCAAGGCTCACCCTGGTCTTCTGGAAGTTCTCGCGGGTCCTCACGCGTgtcttctccaggttctccttgGTTCTCTGACGGGTCTTCTCTAGGTTCTCTTTGGTTCGCTGCTTGGTCTTCTCCATCTGCTCCTTGCTGAAGGCCTTCTTAATTTCGTCCACACGTTGCAGGCCACTGCGCTTGATGCGCGCCACCCGCGATTCCTCCACGGTTTCCTCGATCTCAACCACTTCATCTGTGCCTTGTGCTTCCTCTCCCTCACTCAGCACGTGTTCACCCTCCTCACTTACTGCTGCCTCGGGCTTCACAGTGGTCTTCACTGGCTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244866 lncRNA upstream 33122 6689456 ~ 6737847 (+) False G206801
TU244865 lncRNA upstream 35274 6734117 ~ 6735695 (+) True G206801
TU244777 lncRNA upstream 219817 6550891 ~ 6551152 (+) True G206722
TU244542 lncRNA upstream 261740 6483679 ~ 6509229 (+) True G206540
TU244409 lncRNA upstream 517904 6252344 ~ 6253065 (+) False LOC117598831
TU244902 lncRNA downstream 15425 6790822 ~ 6793398 (+) True G206835
TU245030 lncRNA downstream 123445 6898842 ~ 6899932 (+) True G206942
TU245032 lncRNA downstream 123445 6898842 ~ 6899932 (+) False G206942
TU245037 lncRNA downstream 123445 6898842 ~ 6931386 (+) False G206942
TU245054 lncRNA downstream 154923 6930320 ~ 7002168 (+) True G206955
XM_026917256.2 mRNA upstream 424585 6343263 ~ 6346384 (+) True nkiras2
XM_034309683.1 mRNA upstream 424585 6343359 ~ 6346384 (+) False nkiras2
XM_026916228.2 mRNA upstream 494258 6271135 ~ 6276711 (+) True si:ch73-141c7.1
XM_026916971.2 mRNA upstream 502971 6264199 ~ 6267998 (+) True hsd17b1
XM_034309924.1 mRNA upstream 510305 6258180 ~ 6260664 (+) True LOC117598831
XM_026917007.2 mRNA downstream 117834 6893231 ~ 6898472 (+) True aspdh
XM_034310302.1 mRNA downstream 143610 6919007 ~ 6936389 (+) False pold1
XM_034310304.1 mRNA downstream 144053 6919450 ~ 6936389 (+) False pold1
XM_034310303.1 mRNA downstream 146302 6921699 ~ 6936540 (+) True pold1
XM_026916184.2 mRNA downstream 231751 7007148 ~ 7019641 (+) True eps8l1a
TU244415 other upstream 510112 6254468 ~ 6260857 (+) False LOC117598831
TU244376 other upstream 576005 6190165 ~ 6194964 (+) True ypel3
XR_004579365.1 other upstream 595603 6160334 ~ 6175366 (+) False mapk3
TU244359 other upstream 636398 6130783 ~ 6134571 (+) True si:ch211-198p11.6
XR_003402939.2 other downstream 309044 7084441 ~ 7096679 (+) False eftud2
XR_004579327.1 other downstream 332781 7108178 ~ 7115935 (+) False LOC113528597
trnac-gca_18 other downstream 497063 7272460 ~ 7272531 (+) True trnac-gca_18
trnac-gca_21 other downstream 524216 7299613 ~ 7299684 (+) True trnac-gca_21
TU245701 other downstream 1077794 7853191 ~ 7853509 (+) True G207480

Expression Profile