RNA id: XM_026916398.2


Basic Information

Item Value
RNA id XM_026916398.2
length 4749
RNA type mRNA
GC content 0.46
exon number 20
gene id stat5a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6646058 ~ 6726165 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACGAGTTTAATCGACAAGGCTGCATAACTCACTGCACAAGCTGCCAAGCGCTAGAGGTTTCACTGTGCTTCTCTTCAGTCGCTCCTCGTACATGGTAACACAGGACTGAAGACAAGTGATGGCGGTGTGGATTCAGGCCCAGCAGCTGCAGGGTGACGCCCTGCACCAGATGCAGTCACTCTACGGCCAGCATTTCCCCATAGAGGTGCGACACTACCTGTCCCAGTGGATAGAGGGCCAACTCTGGGACGCTATTGACCTGGAGAACCCACAAGAGGAATTTAAAGCTAAGCGCTTGCTGGACAGTCTAATTCAAGAACTACAGAAAAAGGCAGAACATCAAATGGGAGAGGATGGATTTCTGCTCAAGATCAAACTAGGCCACTACGCTTCACAGTTAAAgAGCACATACGACCGATGTCCGCTGGAGCTGGTGAGATGCATCAAACATATTCTCTACACAGAGCAGAGACTCGTCAGGGAAGCTACTAATTCGAGCTCTCCGTTGAGCGGAATGATGGACAGCATGTCTCAGAAGTACCAGCAGATAAACCAGGCGTTTGAGGAGCTGAGGGTCCTGACGCAGGACACAGAGAACGACTTGCGCAAGCTTCAACACAACCAGGAGTACTTCATCATACAGTATCAGGAGAGTCTCCGAATacaggCTCAGCTATCGAGTCTGGCCACTCTTCCCCCCGCCGACAGACAGCTGCGAGAGCCGAGCCTCCTCAGCAAGAGAGCCACGGTCGAAGCCTGGCTCACCAGAGAAGCCAACACCCTGCAGAAATACAGACTGGGCCTGGCAGAAAAGCACCAGAAAACACTGGCATTGTTGCGGAAACAACAGACACTGATACTCGATGATGAGCTAATCCAGTGGAAGAGACGTCAGCAGCTCGCCGGCAACGGAGGGCCACATGAGGGAGGACTGGATATCCTGCAGTCATGGTGTGAGAAGCTCGCAGAGACCATTTGGCAAAATCGGCAGCAGATCAGGAGGGCAGAGCATTTAAGACAGCAGCTGCCAATCCCCGGCCCCATTGAGGAACTTCTCAATGATCTCAACAGCACCATCACTGATATCATCTCAGCGCTCGTCACcagcaccTTCATCATAGAGAAGCAGCCGCCTCAGGTGCTTAAGACTCAGACAAAGTTTGCGGCTACGGTGCGTTTGCTAGTGGGAGGAAAACTCAACGTCCACATGAACCCTCCTCAAGTGAAAGCCACCATCATCAGCGAGCAGCAGGCCAAGGCGCTGCTAAAAAACGAAAACACCCGGAATGACAGCAGTGGAGAGATCCtgaataataactgtgtgatgGAGTATCACCAGACCACAGGCACCCTGATTGCACACTTCAGGAACATGTCTTTGAAGAGGATCAAGCGTTCAGACCGCCGTGGGGCAGAGTCTGTAACCGAGGAGAAGTTCACCATCTTGTTCGAGTCACAGTTTAGTGTCGGGGGCAACGAGCTGGTTTTTCAGGTCAAGACCCTGTCTTTGCCTGTCGTGGTGATTGTCCATGGAAGTCAGGataacaatgccacagccacgGTTCTATGGGACAACGCTTTTGCTGAACCGGGCCGAGTTCCTTTCCTCGTTCCTGATAAAGTGATGTGGCCACAGCTGTGTGAAGCTCTCAATATGAAGTACAAGGCAGAGGTGCAGTCGAACCGAGGGCTGTCTGAGGAGAACCTGGTCTTCCTCGCTCAGAAGGCCTTCAGCAGCTCCAGCTCCAACCCTGAGGATTACCGGGGCATGACCATGACCTGGTCCCAGTTTAACAGAGAAAGCCTTCCAGGTAGAAACTTCACATTCTGGCAGTGGTTTGACGGTGTCATGGAGCTCACAAAAAAACACCTGAAGCCTCACTGGAATGATGGgGCAATCTTGGGCTTCGTGAATAAGCAGCAGGCTCAGGACATGCTGATGTCCAAACCTAATGGAACGTTCCTGTTGCGCTTCAGTGACTCTGAGATAGGAGGCATCACAATCGCATGGGTGGCAGAGAATCCCAACAAAGCAGGTGAGAGAATGGTGTGGAACCTCATGCCTTACACAACCAAAGACTTCTCTATTCGCTCTCTGGCTGACCGCATAAGTGACCTGAACCACCTGCTGTTCCTGTACCCCGACCGACCCAAAGACGAGGTCTTCTCCAAGTACTACACCCCTCCACTGTCGAAAGCAGTGGACGGCTACGTCAAACCGCAAATCAAACAAGTGGTACCAGAgtttaCGACGCCTAATCCAGACCCAGCAGCAAATCCAACCTACATGGATCACGCGGCATCACCAGCTGTCAGTCACCCGCAAAACTATGGCATCTACCCACCAATgagcgACAGCATGCTGGACGGCGATGGCGACTTTGATCTGGACGACACCATGGATGTAGCAAGGCACGTGGAAGAGCTGCTCCGCCGACCAATGGAGGGCCAGTGGAGCGGCCAGCAGTCGTGACCTCgcgacctctgacctctctcccTTAATGAAGGCTTATTCCATTCATCTCTCCTTCCTTTTCCCTTCCCTTCATTTCATCCCTAATGTGAAAAGCTCAGCGGATGTGGTTGcttctaattttattttggtctcttttttttattatttctcctctttcctctttcattgttgtttttttttctccgcaTGTGAGCTGAATGCACATGCGTGaaagagaaatggaagaaaaatacTACTAGCTTTCTCTTCAGCTCAATACTACCAAACagtattgtgaaaaaaaaaaatgttgttacacacgtgttcttttttttttgttttgttttttttttagttcttttagttttattgttttatttgaagTGATATTTTCTGTCAACATCAGAAAGCCCAAAATAGAACTGTACTACTGTAAAAAGGTGTTTTCTTTTCccaatgttattatttttgtcttttattttatactgtgtccagatttttattttaggtttttttttttttctccccgaAAGTTCACGTGTACAACCCATTGCACTCTGGAACAAacgcatctcttttttttttcgtggGGGAAGTAAGAAATGAGATCACTGTTACCGTGGCAACGTGAGATCACTGTTGTAATGTATATTCGATACACTAAAAGCGTAATTCAATTGTGGTAGAGCCATTCATAGTCAGCGTGTGTACAAATGTTCCTGAGCAGACTGGACATGCATTCTCAATGCCTGAATatatcaaatacacacacacacacacacacacacacacacatcattcacatcatacacacacagatgaaagTAGTATCTGAGAAGTCAGGGTATTTGATGaccctgagaaacacacacacactcacacacacacacacacatacgcacacagtGCCGTGTTTCTCCCTCTCGCTCTGTTTCTCCAGCTGAATAAGGGTGTGGTGATGTATTTGTGTGTCGGACAAACGCTGTTATAACGCATGCTGTACTCTCTCTTCACCCAGAGCCGCAGGTGAACCACTGCacttgttgtcatggtgacgTATGCTGCTCCGATCCTGTGTCCACTCACCACCCTATATCTATCAAAGTGCAAGAAGTGAACCCGCCCACCCTTactctcactttttcttttttctgcctgTATGTTCACTATTTGCCCTcgcaaacacaccacacacacgcgcacacacacacatttatacactcaGGACAAAGAAGTGCAGTGGATGTATTGTTCAAGCTAAAGGAAGTAACAAAAACGAAgatctatattctatatatatatatatatatatatatatatatatatatatatatatatatatgtatataaatttatttttctttaacataatTCTATTTTATTACTGTGGAAGCTCTCTCTATGCTCTGTGTACTGTGAATGCAACCCGCAACCTGAACACTTGGTAGTAGAAGCCTCTTGGTGCTGACTGAAACCAGCCATTAAAGGAGcggtttgtcatttttagagccctctACTGCCTGCGAGGTGAAATGCAACTACAGTGACACCATTAACaaatgtctttttcttcttctaaaaaaaaaacaaaaaacacacgcGCTCTGTTGAAACTATGCATGCAGCTCTGTTTCGTCTGAGATCATTTCCAGGCCAGAAAATGTAAACAACCTGAAattacaaaaagagaaaaaaaggaagacttGATTGCATGCTGATTTATCTTTGCTTAAATGACTCGCTTTCCAAAGGtctagaaacattttaaaaattacaaactgcacctttaagtgaGGAAAAGAGCGAAGTCAGCATCAGAGTGATTTTTTCTACCAACACTGCGATGTCGCTTTTACTCCTCAGCCGAGCTGTTGGATGACTAAAAAAAGCCATACAGCGAAAGCGCACTTAGCCACTGTGCTTCATGTGTTTCTTGCAAATGTTCCTAATTAATACAGTTTGATTCATCTTGGTGTACCTTTCAACCTTTTTCCTGCTTATGTGGGAAGTTGTGTGATTTTTCTCCTTCatcctcgtttttttttttaattattcttttgGTGAGACTGGTCAGTCTCGTCACTCGGTCGTCAGTCTGTCACACTCGTGGTGGCAATGgacatgtgtgtgggtgtgggtgcgtctctgtgtgggtgtgtgtgttgtgtgtggatgtgtgtttaACCCACGTCTTGTGAGTGTTCCCATGTTTTTTGTTCGGTTGTAGTGCTTGGATATGTGTTTTAAAAGAAGAACAAttgaaaataaagttttataaataatttaaactgtA

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0007259 receptor signaling pathway via JAK-STAT biological_process
GO:0048821 erythrocyte development biological_process
GO:0045639 positive regulation of myeloid cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244696 lncRNA downstream 299695 6273816 ~ 6346363 (-) True G206649
TU244662 lncRNA downstream 441862 6203312 ~ 6204196 (-) True G206628
XR_003402891.2 lncRNA downstream 456132 6187474 ~ 6189926 (-) True LOC113527891
XR_003402949.2 lncRNA downstream 692554 5952798 ~ 5953504 (-) True LOC113528476
TU244141 lncRNA downstream 918378 5721634 ~ 5727680 (-) True G206210
TU245006 lncRNA upstream 103902 6824896 ~ 6825760 (-) True G206924
TU245005 lncRNA upstream 105374 6826368 ~ 6828146 (-) True G206923
TU245188 lncRNA upstream 381254 7102248 ~ 7102389 (-) True G207057
TU245372 lncRNA upstream 455538 7176532 ~ 7176755 (-) True G207198
TU245396 lncRNA upstream 506391 7227385 ~ 7227664 (-) True G207221
XM_026916533.2 mRNA downstream 13713 6557138 ~ 6632345 (-) True si:ch211-210g13.5
XM_026917049.2 mRNA downstream 90174 6550541 ~ 6555884 (-) True hcrt
XM_026916862.2 mRNA downstream 97557 6506704 ~ 6548501 (-) True kcnh4a
XM_026916531.2 mRNA downstream 144588 6483671 ~ 6501470 (-) True rab5c
XM_026916972.2 mRNA downstream 164774 6468354 ~ 6481284 (-) True kat2a
XM_026916393.2 mRNA upstream 13123 6734117 ~ 6764914 (-) True stat3
XM_034309888.1 mRNA upstream 13123 6734117 ~ 6753602 (-) False stat3
XM_026916325.2 mRNA upstream 52439 6773433 ~ 6793535 (-) True cavin1a
XM_034309886.1 mRNA upstream 73360 6794354 ~ 6820369 (-) False atp6v0a1a
XM_034309885.1 mRNA upstream 73360 6794354 ~ 6820369 (-) True atp6v0a1a
TU244626 other downstream 451062 6126910 ~ 6194996 (-) True G206604
XR_004579347.1 other downstream 685008 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 685008 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 695061 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 804581 5841137 ~ 5841477 (-) True G206282
trnac-gca_16 other upstream 549912 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 551261 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 552063 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 553312 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 597609 7318603 ~ 7321962 (-) True G207231

Expression Profile