RNA id: TU245005


Basic Information

Item Value
RNA id TU245005
length 1779
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G206923
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6826368 ~ 6828146 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCATATGCAATTCCAATATCCTTCAATCATtcattagatagatagatagatagatagatagatcagagGGAAATTGACCTATGatagcagcacagagagttagTAGTATActaaaagcaattaaaaaagcAGTTTATCCTGGgtagggttgtggtggatccagagcctttcccaggaacactggttgtgaggcaggaatacgcCTTGGCACCATTCACACCCTCATATACACATGGACCCAGAGAGAATGTACactgaaactccacacaggcattAATCTGAGCACAGGATAGAACTGCAAAGCCTAGAGATGGGGACCCTTGCTATACCACCAAACtttaatgtgtaatatatatatattttttttaaaaaagtactgtATCCATCATACACTACACCATTAAAACATTACTCAATCAATATTTCCCATCCCAAACATTCTGTAACTCCCCCTTTCAGCTGTGTTCATATAAGGGATGACATAGCAACCACTGTAGTAGTCAAACTATGTAGTCCACAACAATTTTCCTCTCGAGGACAATAAagtatactactactactactactactactactacaacagACACCCTAGAAACCCCGGTATAACCTTGGTTTCCAATAAAAGACATGGCTAATCACGGATATGTTTAATAGATAACTGGAAACTCAGTGTATGGGACagaagaaatgtgcaaaaaatgctTCCTTTGTATGAGCCTTCCTTCGTAATAccctgcatttaaaaaaaacagactctgATAAGAATTTCTATTAGATGTCTCATTATGAAGGCATTCAGCAAGGCCTGTCCCAGCTGATCCCACCACTGTTATGTAACCGATTTCACAACCATCACAAACTACCTGAAGACTCAGCTGTATCGAAAACAACTGAGAATGATGATACACCGAAACACCCTCTGCATTCACCctaagtgcatgtgtgtgcatatgccTGTCTAGGTGTGTCATCTTTTTCCCTGTTGTCATCTGTTTGTGTGGTTGTTGGCCTCTCATTGGGTACATTCATGTTTCAAGTTAGTCTTCTTTGAcctattaattaatattattcataGTTTCACAGATTTCTTTGTGATTAGTGTTTGCTAGTGTTTACTCCAGGCTTTGTTTTTACTAGCAGGTTCTTACCATTATCATGCACTTGTTTCTGATCAATCAGTTAAATcttaaaatattcagaaattgTTCTTTGTTTATCATATTTGTCATcaaaataatatcaaaatatattttgattctTTTCAGGTACATTAAAGTCTTTAAACCAGCTAAACCACCATGGActgaaggaaaacattttacaatttttgatttatttttgttgcaaTATCTTAAGTTCTCACTAGAATATCATCAATGTGCCTGCATTCAGTGCTTGAGCAGTACACATTTGGACATAGTGCTTTATCTGGTGAGACCGCCATCAGCACGATACAGGCATCAACAATAGGAAAGTAAAAGTGCAATCCGACCAGCAgcacttttagtttttttaaaagctcTGTTCTTGGATTCAATTCAAACTAACTTATaagtcactttgaataaaagaATCTGCTGcaagaataaatgtaaaatatatgacAGATGATATCAGAGTGCTGATCCACTACAGGAGTACAATAACGTGGTCCACTGGGTCCATAATACTGAGGAAAAACCCTTTCTAGATGAGCATCCCTTCCTGATTGGGCCTAAGACTTGCGACTGACTGTCTAGTGAAGTCTGTGTCTTGGTTCTTCAATGTGCATTGTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245006 lncRNA downstream 608 6824896 ~ 6825760 (-) True G206924
TU244981 lncRNA downstream 178554 6646097 ~ 6647814 (-) False stat5a
TU244696 lncRNA downstream 480005 6273816 ~ 6346363 (-) True G206649
TU244662 lncRNA downstream 622172 6203312 ~ 6204196 (-) True G206628
XR_003402891.2 lncRNA downstream 636442 6187474 ~ 6189926 (-) True LOC113527891
TU245188 lncRNA upstream 274102 7102248 ~ 7102389 (-) True G207057
TU245372 lncRNA upstream 348386 7176532 ~ 7176755 (-) True G207198
TU245396 lncRNA upstream 399239 7227385 ~ 7227664 (-) True G207221
TU245401 lncRNA upstream 409527 7237673 ~ 7237881 (-) True G207226
TU245403 lncRNA upstream 412095 7240241 ~ 7240907 (-) True G207227
XM_034309886.1 mRNA downstream 5999 6794354 ~ 6820369 (-) False atp6v0a1a
XM_034309885.1 mRNA downstream 5999 6794354 ~ 6820369 (-) True atp6v0a1a
XM_026916325.2 mRNA downstream 32833 6773433 ~ 6793535 (-) True cavin1a
XM_026916393.2 mRNA downstream 61454 6734117 ~ 6764914 (-) True stat3
XM_026916777.2 mRNA upstream 18749 6846895 ~ 6860907 (-) True stk17al
XM_026916996.2 mRNA upstream 60516 6888662 ~ 6890923 (-) True tmem86b
XM_034310127.1 mRNA upstream 70861 6899007 ~ 6916995 (-) True gys1
XM_034310124.1 mRNA upstream 70861 6899007 ~ 6916812 (-) False gys1
XM_034310123.1 mRNA upstream 70861 6899007 ~ 6916812 (-) False gys1
TU244626 other downstream 631372 6126910 ~ 6194996 (-) True G206604
XR_004579347.1 other downstream 865318 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 865318 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 875371 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 984891 5841137 ~ 5841477 (-) True G206282
trnac-gca_16 other upstream 442760 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 444109 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 444911 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 446160 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 490457 7318603 ~ 7321962 (-) True G207231

Expression Profile