RNA id: TU245054


Basic Information

Item Value
RNA id TU245054
length 258
lncRNA type sense_over
GC content 0.50
exon number 2
gene id G206955
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6930320 ~ 7002168 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttttttgggggaggaggTGGGGTGGAGCTGTCCCTCTGACTTGCTTGCTTTATTTTCTTCGTGCTGTCTCAGGTTCTCTCTGTGTTGCCTGAACACGCAGAAGTCACCGTGCTCTGAACAGACCACACGTTTAATCCTCACGCCACGTTTCTGCCGGGTTTCTACCCAAACTCACTAATAACTCTGTTCTGTAGTGAAACCGAAGCCCTAGTGCGCTTCACTGACCGCTCATTGAAGCTCCACTAACGGG

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245030 lncRNA upstream 30388 6898842 ~ 6899932 (+) True G206942
TU245032 lncRNA upstream 30388 6898842 ~ 6899932 (+) False G206942
TU244904 lncRNA upstream 119967 6730685 ~ 6810353 (+) False G206835
TU244902 lncRNA upstream 136922 6790822 ~ 6793398 (+) True G206835
TU244900 lncRNA upstream 154923 6770969 ~ 6775397 (+) False G206835
TU245151 lncRNA downstream 52218 7054386 ~ 7058819 (+) True G207025
TU245223 lncRNA downstream 292317 7294485 ~ 7296973 (+) True G207084
TU245258 lncRNA downstream 315859 7318027 ~ 7318360 (+) True G207111
TU245255 lncRNA downstream 316970 7319138 ~ 7321930 (+) False spsb3a
TU245299 lncRNA downstream 383848 7386016 ~ 7388543 (+) True G207140
XM_026917007.2 mRNA upstream 31848 6893231 ~ 6898472 (+) True aspdh
XM_026917256.2 mRNA upstream 583936 6343263 ~ 6346384 (+) True nkiras2
XM_034309683.1 mRNA upstream 583936 6343359 ~ 6346384 (+) False nkiras2
XM_026916228.2 mRNA upstream 653609 6271135 ~ 6276711 (+) True si:ch73-141c7.1
XM_026916971.2 mRNA upstream 662322 6264199 ~ 6267998 (+) True hsd17b1
XM_026916184.2 mRNA downstream 4980 7007148 ~ 7019641 (+) True eps8l1a
XM_034309690.1 mRNA downstream 5006 7007174 ~ 7019641 (+) False eps8l1a
XM_026916185.2 mRNA downstream 9083 7011251 ~ 7019641 (+) False eps8l1a
XM_034310184.1 mRNA downstream 18303 7020471 ~ 7045978 (+) True LOC117598990
XM_034310239.1 mRNA downstream 25607 7027775 ~ 7033434 (+) True LOC117599002
TU244415 other upstream 669463 6254468 ~ 6260857 (+) False LOC117598831
TU244376 other upstream 735356 6190165 ~ 6194964 (+) True ypel3
XR_004579365.1 other upstream 754954 6160334 ~ 6175366 (+) False mapk3
TU244359 other upstream 795749 6130783 ~ 6134571 (+) True si:ch211-198p11.6
XR_003402939.2 other downstream 82273 7084441 ~ 7096679 (+) False eftud2
XR_004579327.1 other downstream 106010 7108178 ~ 7115935 (+) False LOC113528597
trnac-gca_18 other downstream 270292 7272460 ~ 7272531 (+) True trnac-gca_18
trnac-gca_21 other downstream 297445 7299613 ~ 7299684 (+) True trnac-gca_21
TU245701 other downstream 851023 7853191 ~ 7853509 (+) True G207480

Expression Profile