RNA id: TU245188


Basic Information

Item Value
RNA id TU245188
length 142
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G207057
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7102248 ~ 7102389 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccaataattcatgaacatactgtgtattttatatttatttaagcatGACAATCACATAGGGAAGCCATGTGTCAGGCCCTAATAGATATTCCTATAAAATGATCTAAAACACATTTCAATTCTTGCAGCATTTGTACAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245005 lncRNA downstream 274102 6826368 ~ 6828146 (-) True G206923
TU245006 lncRNA downstream 276488 6824896 ~ 6825760 (-) True G206924
TU244981 lncRNA downstream 454434 6646097 ~ 6647814 (-) False stat5a
TU244696 lncRNA downstream 755885 6273816 ~ 6346363 (-) True G206649
TU244662 lncRNA downstream 898052 6203312 ~ 6204196 (-) True G206628
TU245372 lncRNA upstream 74143 7176532 ~ 7176755 (-) True G207198
TU245396 lncRNA upstream 124996 7227385 ~ 7227664 (-) True G207221
TU245401 lncRNA upstream 135284 7237673 ~ 7237881 (-) True G207226
TU245403 lncRNA upstream 137852 7240241 ~ 7240907 (-) True G207227
TU245380 lncRNA upstream 153236 7255625 ~ 7262113 (-) True G207205
XM_026917287.2 mRNA downstream 34900 7058969 ~ 7067348 (-) True kcnj12b
XM_026917288.2 mRNA downstream 39814 7058969 ~ 7062434 (-) False kcnj12b
XM_034309660.1 mRNA downstream 39823 7058969 ~ 7062425 (-) False kcnj12b
XM_026917093.2 mRNA downstream 100068 6980540 ~ 7002180 (-) True slc6a16a
XM_034310252.1 mRNA downstream 100328 6980540 ~ 7001920 (-) False slc6a16a
XM_034309697.1 mRNA upstream 32948 7135337 ~ 7146912 (-) False LOC113528017
XM_034309696.1 mRNA upstream 32948 7135337 ~ 7146912 (-) False LOC113528017
XM_026916245.2 mRNA upstream 32948 7135337 ~ 7146912 (-) False LOC113528017
XM_026916244.2 mRNA upstream 32948 7135337 ~ 7146912 (-) True LOC113528017
XM_026916930.2 mRNA upstream 115193 7217582 ~ 7225228 (-) True rpl19
TU244626 other downstream 907252 6126910 ~ 6194996 (-) True G206604
XR_004579347.1 other downstream 1141198 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 1141198 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 1151251 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 1260771 5841137 ~ 5841477 (-) True G206282
trnac-gca_16 other upstream 168517 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 169866 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 170668 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 171917 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 216214 7318603 ~ 7321962 (-) True G207231

Expression Profile