RNA id: TU245462


Basic Information

Item Value
RNA id TU245462
length 1533
RNA type TUCP
GC content 0.47
exon number 3
gene id natd1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7425717 ~ 7431112 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGGATGGAGTGTTTTTGCTTGATGTTCGCCTCGCGCTGCCTGGCTATGACTGCGCTTCTGGGAGATTTCAGATCAGTCGTGGCACACTGACACGCAGCGATCCCCGAGACATTATGGCCCAGGCTGCTCAGATGAATGTCATCGAGATCAACAGCCCCATTCGCGTTGAACACGACAAAAAACGACGCCAGTTCAGCATCCGTCTCAACGGTTCTTATGATAGAGCCGTGTTGCTGTATGAATATGTGGGGAAGAAGACGGTGGATCTGCAACACACTGAGGTTCCAGATGCTTACCGAGGACGAGGAATCGCCAAGCACCTGGCCAAGGCAGCGATGGATTTTGTGGTCGAGGAAGACCTCAGGGCTCACCTGACCTGCTGGTACATTCAAAAGTATGTGAAAGAAAACCCTCACCCTCACTACCTGGAGCACATCATCCACTGAGAGAGATGCCAACAGGATGAAAAGACTTCTGTTGCTGACTGTGTGGACAGGGCATTTGAGCTCCAGGGGAGGGGGGGTTGAAGGGAATTGGTCTTCAGTGAGAGAGATattgtgtgttagagagagtgaATGTTTGGCGGTGACAAGATAGAAATTATCAGCAACTGTACAGACAACGCTGCGGACGTATCTACGACATTTGGAACATCCGTTTTCCATGAGAGGGGGGacatttgtgtgctttgtgaACAAGTGGGCCTGTTTTTACAGCACTTTGTGGTTATGGGATCCACATGCCAAAACAGGGTTCCATGCATATCatccatggaaaaaaaaaacaaaacaaaacagcaatttTTGTTACTTCACATGCCTTTCTAGCCCAATGCCTTGAGGTCCAAGTGGTGCTCAAAACACACGtgcatgcaaaaaaattaaCCTGTTTGATTGGAAGACAACATAGGTCAACGTAATAGCCATGTAGTGgttgtgagtgtgtatttagGTACCATGTGGAATCCAGGGCCAGTATCGAGTCAATAGTCCTGATAtgacccccaccccccacctcaaacacacaccccaccACCATACACTAAGGGACAGACTCTCTCAGGATCGACACTTGAAACAGTTAACACTACCCTTCAGGACAgggagtgtgtaatgtgtgtttgcataacGGAAGCATGGTGTGAGGTATGTCATCTCTTTGTGCGTTAgagtcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattcccctACCTACCTTTCCCCATGGCCTTAATAATCATGGTGTCCGTGAAGGCCACCGATAAACAGGGTGTGTAAGGTGCTCAAACTACAGTGGTGCAGTCTGCCCTTCTACTATAACATCTGTAGCAACATCCAGCAATTTGATGAGAATGAAGGTCATGCTCTCTGAATATTTAGAGGCTTGCCATAGTCTGTAGTGACTGTTACAAGAGTATGATTCACGCATATGAACGAGGCCTGAAATTCATCAGTTTTTACACATTCATGTACTCTATATTAATAttcaagttttaaaataaagaagcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245440 lncRNA downstream 112075 7312082 ~ 7313655 (-) True G207254
TU245380 lncRNA downstream 163617 7255625 ~ 7262113 (-) True G207205
TU245403 lncRNA downstream 184823 7240241 ~ 7240907 (-) True G207227
TU245401 lncRNA downstream 187849 7237673 ~ 7237881 (-) True G207226
TU245396 lncRNA downstream 198066 7227385 ~ 7227664 (-) True G207221
TU245640 lncRNA upstream 128695 7559767 ~ 7564972 (-) True crhr1
TU245771 lncRNA upstream 512606 7943678 ~ 7948171 (-) True G207540
TU245797 lncRNA upstream 598134 8029206 ~ 8029449 (-) True G207565
TU245805 lncRNA upstream 602210 8033282 ~ 8036848 (-) True G207571
TU245906 lncRNA upstream 679586 8110658 ~ 8114574 (-) True G207653
XM_026916177.2 mRNA downstream 2544 7419697 ~ 7423186 (-) True tmem11
XM_026916176.2 mRNA downstream 3128 7419697 ~ 7422602 (-) False tmem11
XM_026917136.2 mRNA downstream 37336 7381596 ~ 7388394 (-) True jpt2
XM_026916358.2 mRNA downstream 49700 7334913 ~ 7376030 (-) False mapk8ip3
XM_034309674.1 mRNA upstream 919 7431991 ~ 7437181 (-) False phospho1
XM_026916163.2 mRNA upstream 919 7431991 ~ 7437179 (-) True phospho1
XM_034310222.1 mRNA upstream 15491 7446563 ~ 7467835 (-) True znf652
XM_026917197.2 mRNA upstream 42440 7473512 ~ 7480256 (-) True phb
XM_026917177.2 mRNA upstream 133220 7564292 ~ 7705492 (-) False crhr1
TU245410 other downstream 103768 7318603 ~ 7321962 (-) True G207231
trnac-gca_20 other downstream 151353 7274306 ~ 7274377 (-) True trnac-gca_20
trnac-gca_19 other downstream 152602 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_17 other downstream 153404 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_16 other downstream 154753 7270906 ~ 7270977 (-) True trnac-gca_16
XR_003402917.2 other upstream 818813 8249885 ~ 8267638 (-) False slc4a1a
XR_003402976.1 other upstream 853402 8284474 ~ 8284592 (-) True LOC113528661
TU246334 other upstream 1276882 8707954 ~ 8713318 (-) True ndufa4l
trnav-cac_10 other upstream 1756448 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 1765424 9196496 ~ 9203640 (-) False dnal4a

Expression Profile