RNA id: XM_026916016.2


Basic Information

Item Value
RNA id XM_026916016.2
length 1661
RNA type mRNA
GC content 0.46
exon number 4
gene id natd1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7425717 ~ 7431112 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gattggtcgagaGGAGACACGTGACTTTACAGCTGATTTCCTTGGATGGAGTGTTTTTGCTTGATGTTCGCCTCGCGCTGCCTGGCTATGACTGCGCTTCTGGGAGATTTCAGATCAGTCGTGGCACACTGACACGCAGCGATCCCCGAGACATTATGGCCCAGGCTGCTCAGATGAATGTCATCGAGATCAACAGCCCCATTCGCGTTGAACACGACAAAAAACGACGCCAGTTCAGCATCCGTCTCAACGGTTCTTATGATAGAGCCGTGTTGCTGTATGAATATGTGGGGAAGAAGACGGTGGATCTGCAACACACTGAGGTTCCAGATGCTTACCGAGGACGAGGAATCGCCAAGCACCTGGCCAAGTCAATGGTTTTCATCATATACAGTCACTTGGTGCTTCTCTGTACATCAGCAGATGGTATCTGCATATTCTGGAAGGCAGCGATGGATTTTGTGGTCGAGGAAGACCTCAGGGCTCACCTGACCTGCTGGTACATTCAAAAGTATGTGAAAGAAAACCCTCACCCTCACTACCTGGAGCACATCATCCACTGAGAGAGATGCCAACAGGATGAAAAGACTTCTGTTGCTGACTGTGTGGACAGGGCATTTGAGCTCCAGGGGAGGGGGGGTTGAAGGGAATTGGTCTTCAGTGAGAGAGATattgtgtgttagagagagtgaATGTTTGGCGGTGACAAGATAGAAATTATCAGCAACTGTACAGACAACGCTGCGGACGTATCTACGACATTTGGAACATCCGTTTTCCATGAGAGGGGGGacatttgtgtgctttgtgaACAAGTGGGCCTGTTTTTACAGCACTTTGTGGTTATGGGATCCACATGCCAAAACAGGGTTCCATGCATATCatccatggaaaaaaaaaacaaaacaaaacagcaatttTTGTTACTTCACATGCCTTTCTAGCCCAATGCCTTGAGGTCCAAGTGGTGCTCAAAACACACGtgcatgcaaaaaaattaaCCTGTTTGATTGGAAGACAACATAGGTCAACGTAATAGCCATGTAGTGgttgtgagtgtgtatttagGTACCATGTGGAATCCAGGGCCAGTATCGAGTCAATAGTCCTGATAtgacccccaccccccacctcaaacacacaccccaccACCATACACTAAGGGACAGACTCTCTCAGGATCGACACTTGAAACAGTTAACACTACCCTTCAGGACAgggagtgtgtaatgtgtgtttgcataacGGAAGCATGGTGTGAGGTATGTCATCTCTTTGTGCGTTAgagtcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattcccctACCTACCTTTCCCCATGGCCTTAATAATCATGGTGTCCGTGAAGGCCACCGATAAACAGGGTGTGTAAGGTGCTCAAACTACAGTGGTGCAGTCTGCCCTTCTACTATAACATCTGTAGCAACATCCAGCAATTTGATGAGAATGAAGGTCATGCTCTCTGAATATTTAGAGGCTTGCCATAGTCTGTAGTGACTGTTACAAGAGTATGATTCACGCATATGAACGAGGCCTGAAATTCATCAGTTTTTACACATTCATGTACTCTATATTAATAttcaagttttaaaataaagaagcagATGTATCAAGTCA

Function

GO: NA

KEGG:

id description
K06975 K06975; uncharacterized protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245440 lncRNA downstream 112062 7312082 ~ 7313655 (-) True G207254
TU245380 lncRNA downstream 163604 7255625 ~ 7262113 (-) True G207205
TU245403 lncRNA downstream 184810 7240241 ~ 7240907 (-) True G207227
TU245401 lncRNA downstream 187836 7237673 ~ 7237881 (-) True G207226
TU245396 lncRNA downstream 198053 7227385 ~ 7227664 (-) True G207221
TU245640 lncRNA upstream 128655 7559767 ~ 7564972 (-) True crhr1
TU245771 lncRNA upstream 512566 7943678 ~ 7948171 (-) True G207540
TU245797 lncRNA upstream 598094 8029206 ~ 8029449 (-) True G207565
TU245805 lncRNA upstream 602170 8033282 ~ 8036848 (-) True G207571
TU245906 lncRNA upstream 679546 8110658 ~ 8114574 (-) True G207653
XM_026916177.2 mRNA downstream 2531 7419697 ~ 7423186 (-) True tmem11
XM_026916176.2 mRNA downstream 3115 7419697 ~ 7422602 (-) False tmem11
XM_026917136.2 mRNA downstream 37323 7381596 ~ 7388394 (-) True jpt2
XM_026916353.2 mRNA downstream 49687 7334913 ~ 7376030 (-) False mapk8ip3
XM_034309674.1 mRNA upstream 879 7431991 ~ 7437181 (-) False phospho1
XM_026916163.2 mRNA upstream 879 7431991 ~ 7437179 (-) True phospho1
XM_034310222.1 mRNA upstream 15451 7446563 ~ 7467835 (-) True znf652
XM_026917197.2 mRNA upstream 42400 7473512 ~ 7480256 (-) True phb
XM_026917177.2 mRNA upstream 133180 7564292 ~ 7705492 (-) False crhr1
TU245410 other downstream 103755 7318603 ~ 7321962 (-) True G207231
trnac-gca_20 other downstream 151340 7274306 ~ 7274377 (-) True trnac-gca_20
trnac-gca_19 other downstream 152589 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_17 other downstream 153391 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_16 other downstream 154740 7270906 ~ 7270977 (-) True trnac-gca_16
XR_003402917.2 other upstream 818773 8249885 ~ 8267638 (-) False slc4a1a
XR_003402976.1 other upstream 853362 8284474 ~ 8284592 (-) True LOC113528661
TU246334 other upstream 1276842 8707954 ~ 8713318 (-) True ndufa4l
trnav-cac_10 other upstream 1756408 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 1765384 9196496 ~ 9203640 (-) False dnal4a

Expression Profile