RNA id: trnas-cga_1


Basic Information

Item Value
RNA id trnas-cga_1
length 82
RNA type tRNA
GC content 0.50
exon number 1
gene id trnas-cga_1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8008186 ~ 8008411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGCGATGGCCGAGAGGTTAAGGCGTTGGACTCGAAATCCAATGGGGTTTCCCCGCGCAGGTTCGAACCCTGCTCGCAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245704 lncRNA upstream 152297 7855431 ~ 7855889 (+) True G207483
XR_003402956.1 lncRNA upstream 316517 7686051 ~ 7691669 (+) True LOC113528563
TU245526 lncRNA upstream 440373 7564303 ~ 7567813 (+) True G207309
TU245323 lncRNA upstream 479448 7444823 ~ 7528738 (+) True G207158
TU245322 lncRNA upstream 564433 7443069 ~ 7443753 (+) True G207157
TU245802 lncRNA downstream 25658 8033925 ~ 8035373 (+) True G207570
TU245829 lncRNA downstream 112185 8120452 ~ 8143237 (+) True LOC117599010
XR_004579452.1 lncRNA downstream 112186 8120453 ~ 8142645 (+) False LOC117599010
TU245851 lncRNA downstream 149677 8157944 ~ 8158181 (+) True G207610
TU245858 lncRNA downstream 193025 8201292 ~ 8201592 (+) True G207616
XM_026916959.2 mRNA upstream 52941 7953794 ~ 7955245 (+) True tcap
XM_026917174.2 mRNA upstream 57938 7933366 ~ 7950248 (+) False syngr1a
XM_026917173.2 mRNA upstream 57938 7933366 ~ 7950248 (+) False syngr1a
XM_026917175.2 mRNA upstream 57938 7933366 ~ 7950248 (+) False syngr1a
XM_034310082.1 mRNA upstream 61285 7933366 ~ 7946901 (+) True syngr1a
XM_026917299.2 mRNA downstream 2266 8010533 ~ 8027891 (+) True itgb3a
XM_034310185.1 mRNA downstream 23414 8031681 ~ 8042803 (+) True mettl2a
XM_034310023.1 mRNA downstream 39159 8047426 ~ 8062595 (+) True tlk2
XM_034310024.1 mRNA downstream 39159 8047426 ~ 8062595 (+) False tlk2
XM_034309970.1 mRNA downstream 62447 8070714 ~ 8114585 (+) True mrc2
TU245701 other upstream 154677 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 708502 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 735655 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 892251 7108178 ~ 7115935 (+) False LOC113528597
XR_003402939.2 other upstream 911507 7084441 ~ 7096679 (+) False eftud2
XR_003402909.1 other downstream 888351 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 1053298 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 1936039 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 2341135 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 2364148 10372415 ~ 10417881 (+) False G208781