RNA id: TU245854


Basic Information

Item Value
RNA id TU245854
length 1673
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G207612
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8236733 ~ 8250981 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGACAGGTTTATTTGTTCAAATGGTATATTCCAGGAATATAACACCTCTGACTATAGAAAACATCCAAATGTTCCAAATTAGCAGTacaaatttctttttcttttttttttgtcatttctacaaataaacaaatagctGAGGGGtataaaaactaaaacataaatttaaaattttcccTCCTCAGAGCAAATGACAAACTAATCCAGACCAGTGGCCTCTGTAAGCACCGCCTAGGGAAGCTCGGTCAAttgaaaatacaaattaaacCATGTTCACtcaatacaaattaaaaaaaaaaaagaagtcatatTTACAATTACCATACAACAGCAGTGAACCATATCCATCTGCACTGATCTCATCATTTCTAGTCATCACTTCTAATTCTACAGTGGGTTCCATACCTGCTATGTTCCTCaacaaacattataaataaGCAGTTCATTCAGCGGGATatataagacacacacacactacattatgtCTTGTTCTTTCGAAGGGGAACTGACGTAATATCTCTGGGTCTTCTACTGACAGACACCAGTGATCCGAGTGGTGTGCACACAGAAGCTCAAAAACTAGCAAACTcttaaaatttttttgcaatgattttttttcttttcttttttttttttttttttttttttaaacacacagggCACAGAtgagagggggggaaaaaaaacagctaccCCAAACTGTTCATATATACATAACATAAAGGAACTCTCctctgttaaataaaacatttgtttacattCCTTGAGCTGGTGCGTATCAGAATGCATCAGTGactataaaaatacaaagaggTTAAAGGGTATGGGACATCAGGAACACTGAGAGGACAGTCAGCTGATGAGGCTTTTCAGGATAAgtgcaaggaaaaaaaatcatacatactagacatttaaaataaaccaatagttaaaacaaactattttttaaaaggaaatttgTAGCCCTGCaaagcaacattaaaaaaaaaaaaaaaaaaaaaaaaaaagaaacacagggTGATATTGTAGCTACTGTCAATGTAGAAACACATTATAGGCATAATACTATATTTAATCTCAAATGCTGCACAGAAAAAAGCTTTTGCATAGAGCTTAAAAAAGAAGTTATTAAACACTATTAGCTAATGGCTTTCATACGGGTGTCTCAAAAGTCTCcacacataggggaaattaacactttttagcaaaatgtctaaTGTCAAaacgtccatgaacatccactgacgaaagCACAATTGACGTGGTGCTGGCTTACATAGTCCCCTACGTATGGAGACTTTTCGGGCACTCTGTAtgataaaaacaatataaaatctAACAATTCAAAAAGTAAAGCAAAACAGTCTTAGGAGAAAAATGAACTGGTATAGAGGATCTACTCAGTAGTgggaaatgattaaaatgtgcaTGCAAACCAGAAAAAGGTTGATAAAGCTTGACTATGCGATGGTTTTGACACTGTGGGTCCTGTTCCTGTGGTTCCACACTATAACTCTTGCGATAGTTTAATGAAGGCACTGGACAGAGTTTAAGGCATGATGCCTGAGCTCACAGGTTCAGTGAAATGCTAGAAGTCATTTATGAGAAGGGACACTCATCATACACATCCACCCCCTGCTCCTCCTCAAATGTCACCTTGGCATCATCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402951.2 lncRNA upstream 26866 8209298 ~ 8209867 (+) True LOC113528504
TU245858 lncRNA upstream 35141 8201292 ~ 8201592 (+) True G207616
TU245851 lncRNA upstream 78552 8157944 ~ 8158181 (+) True G207610
TU245829 lncRNA upstream 93496 8120452 ~ 8143237 (+) True LOC117599010
XR_004579452.1 lncRNA upstream 94088 8120453 ~ 8142645 (+) False LOC117599010
TU245973 lncRNA downstream 36476 8287457 ~ 8289905 (+) True G207717
TU246111 lncRNA downstream 234655 8485636 ~ 8485935 (+) True G207845
XR_004579432.1 lncRNA downstream 248773 8499754 ~ 8534003 (+) True LOC113528543
XR_004579433.1 lncRNA downstream 248773 8499754 ~ 8534003 (+) False LOC113528543
TU246201 lncRNA downstream 441740 8692721 ~ 8717277 (+) True G207927
XM_026916463.2 mRNA upstream 10728 8219525 ~ 8226005 (+) True tmub2
XM_026916464.2 mRNA upstream 10728 8219527 ~ 8226005 (+) False tmub2
XM_026916181.2 mRNA upstream 18382 8212034 ~ 8218351 (+) True asb16
XM_026916182.2 mRNA upstream 19377 8212029 ~ 8217356 (+) False asb16
XM_026916195.2 mRNA upstream 35950 8163843 ~ 8200783 (+) True vat1
XM_026917167.2 mRNA downstream 60035 8311016 ~ 8358151 (+) True ngfra
XM_026917121.2 mRNA downstream 203022 8454003 ~ 8484944 (+) True LOC113528522
XM_034310186.1 mRNA downstream 592216 8843197 ~ 8873465 (+) True LOC113528198
XM_034310049.1 mRNA downstream 625251 8876232 ~ 8882985 (+) True LOC113528197
XM_026916345.2 mRNA downstream 636424 8887405 ~ 8893797 (+) True LOC113528067
trnas-cga_1 other upstream 228466 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 383224 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 937049 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 964202 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 1120798 7108178 ~ 7115935 (+) False LOC113528597
XR_003402909.1 other downstream 645637 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 810584 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 1693325 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 2098421 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 2121434 10372415 ~ 10417881 (+) False G208781

Expression Profile